PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462886572

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

GRAS

Protein Properties

Length: 253aa MW: 27019.6 Da PI: 5.7898

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462886572	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	138	1e-42	49	231	24	202
GRAS 24 Larlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd.. 118 a++ +las d ++qRlaa+f+ ALa++l++ v++l++al +s++s+ + + e a++ +++ P++k+++lt+N+aIlea+ege+ vH++D++ 462886572 49 AAEITQLASLDSpHTLQRLAAVFADALARKLLNLVPGLSRALLMSSSSSASisGAAEQEARRHVFDMLPFMKLAYLTTNHAILEAMEGERFVHVVDLSgp 148 57899999999999**************************777777666667788899999******************************966 PP GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEal 202 +++QW+aL++a+ R++gpp+lR+T+v++ s+e l +++ La+ Ae++++pf+f+ v+ rle++e ++L rv++gEal 462886572 149 CANPVQWIALFHAFRGRRGGPPHLRVTAVHE----SREFLGNMAGVLAREAEAFDIPFQFDG-VEARLEEMEADALrhslRVRSGEAL 231 799************************....9************************.7999999988777333366668876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	23.415	1	253	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-40	49	231	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MLQDDVVSSA TSSTLYSPSA AHGYGGSWVQ ELSQDQQSVR LVGLLYQCAA EITQLASLDS 60 PHTLQRLAAV FADALARKLL NLVPGLSRAL LMSSSSSASI SGAAEQEARR HVFDMLPFMK 120 LAYLTTNHAI LEAMEGERFV HVVDLSGPCA NPVQWIALFH AFRGRRGGPP HLRVTAVHES 180 REFLGNMAGV LAREAEAFDI PFQFDGVEAR LEEMEADALR HSLRVRSGEA LGPASSPPTT 240 LPGVGAGTAE AAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-19	29	231	7	215	Protein SCARECROW
5b3h_A	8e-19	29	231	6	214	Protein SCARECROW
5b3h_D	8e-19	29	231	6	214	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462886572

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068885	1e-41	BT068885.1 Zea mays full-length cDNA clone ZM_BFc0155C10 mRNA, complete cds.
GenBank	EU975039	1e-41	EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
GenBank	KJ728001	1e-41	KJ728001.1 Zea mays clone pUT6130 GRAS transcription factor (GRAS29) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703080.1	1e-115	scarecrow-like protein 3
TrEMBL	A0A1E5WC05	1e-115	A0A1E5WC05_9POAL; Scarecrow-like protein 3 (Fragment)
TrEMBL	K3Y6U2	1e-114	K3Y6U2_SETIT; Uncharacterized protein
STRING	Si009933m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	3e-45	scarecrow-like 3