PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886569
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 376aa    MW: 41721.8 Da    PI: 4.7985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886569genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS79.27.1e-25183239322
       GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                +vv+e ea+hn++ F erf eal+yy++lfd+le + ++  eer+ vEr +lg+ei+ vva egaer+erhe+l++W +   +a
  462886569   1 MVVTEPEANHNAAAFQERFDEALNYYASLFDCLERS-SHRPEERARVERLVLGEEIRGVVAREGAERKERHERLAQWARSCCRA 83 
                79********************************99.67779***********************************9877664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.4E-22183IPR005202Transcription factor GRAS
PROSITE profilePS5098513.8731115IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVVTEPEANH NAAAFQERFD EALNYYASLF DCLERSSHRP EERARVERLV LGEEIRGVVA  60
REGAERKERH ERLAQWARSC CRAAGGEAPT RGTSRAARMY ARAELDLIKV KLFGAVKVSH  120
STVVAAHRDS VLIDVTLEAR WMRDKTDHFV YSVELDDPVV SLDDPNTITF ALCEEHHEEE  180
HGAADSTASL ATIKRAPPAT PPAATPSPSR VCVQVKLFGA VKVSHSTVVA AHRDSVLIDV  240
TLEARWMRDK TDHFVYSVEL DDPVVSLDDP NTITFALCEE HHEEEHGAAD STGSVYSCFA  300
FFPEAELVLL LARRHNDASS CRMTVRGDAS SDEEEEDAVE PNDVLCLAPS FLTFLLLLSF  360
LEPNKFVTSF MATLPS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780336e-57FQ378033.1 Oryza brachyantha chromosome 12.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-20scarecrow-like 3