PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886352
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 1043aa    MW: 112945 Da    PI: 5.4696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886352genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001326348223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C +C+ +F ++  +++H+ + H
  462886352 326 ECRKCNLTFDDQGAYMQHQLSfH 348
                5******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-6207257IPR016177DNA-binding domain
PROSITE patternPS000280327348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MGTEVAAVVD LRALSQSDLA ALASASPYAV DPRLGRRRDA DFLPPPKIDR SVFNESAGSR  60
KQTFSRHRAA TNISHNLTPA AASSSATASA HTEEDSENRL IVFHLQSLFA RDDPSYPPPP  120
PIQPRPQTLT TPAIAAPAPP APSLPQAADP DREVINPKGA AVDLARLAEL KRTAGLGSEP  180
ELLGFMNSLE GQWGSRRRRR KFVDASMFGD HLPRGWKLLL GLKRKERVAW INCRRYVSPK  240
GHQFATCKEV SSYLISVLGY PEANQTATHS NSASVHGLNS VNQANPAEEK QITIPVSSVA  300
LLSHSGDSHQ QKLQKDESRM GVSAKECRKC NLTFDDQGAY MQHQLSFHQR KAKRRRVSKS  360
DELGASVDGK VQTRECEKTS EEGPGNFDHS VPDVRDQGQS TTNLFDGAFS GELGGKPSMI  420
AAQCVLQQMP ALPQQEKEPS APEMTDLPVL EKGTLNRKRN HNGALMEMTD LPVLEKGPAA  480
GESVSGHHKE PPKMMTSFPE QQNKPVAGDR VFEHHQDPVI NSSDCKINNG ASHNAGASLA  540
VDEESKFSTC NIATIHESYN PKYLQHPSKE CSQMFNRTDE TCSIPKGVSP TSYGPDESKC  600
TDNSVGYNDT TQPKQVGSSP KENNFDNLME NKPLSISLDE RDLNSVDMEV HDASVVCKVV  660
NPPSIENPAV DKSGIRIRDV NLNSCLDTIS SPVSGGNYDT SNTTDDATRS SIIAQCFGTN  720
SNDDNACKDG NLANQNKSSK GENFVNQKND MVYQSNLTMG HIPPAQINVD FFTSELKNYG  780
NRSEDNAKEA LINSRNMTGN ETGFDVEAYN NDIFNGTITE SSLAQLNNAI NMKNDFASCY  840
SLSDLNTLTG GTATDEIDIH GMRNSYVGST SRDEPNGHCT LDIDIKGSML EALEKSDSDL  900
ENQYSGAGPS CDSLPTAGPS GNMDDFMSMQ TNFGSFTSLV RAVEDVPLSR IIQDQCDLQL  960
GFGGPKQPMY PSFEQQLRMA SAGAPPYGGM GRHDSVPVPE PTLMLGYAPQ LGSCPPFQLG  1020
WGASLSKMGA GRVALVVVPY VGA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348355QRKAKRRR
2352356KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957094.10.0uncharacterized protein LOC101759536
TrEMBLA0A1E5WKC40.0A0A1E5WKC4_9POAL; Uncharacterized protein
STRINGPavir.Ba01787.1.p0.0(Panicum virgatum)
STRINGPavir.Bb02507.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419