PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 1043aa MW: 112945 Da PI: 5.4696 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 326 | 348 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C+ +F ++ +++H+ + H 462886352 326 ECRKCNLTFDDQGAYMQHQLSfH 348 5******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.89E-6 | 207 | 257 | IPR016177 | DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 327 | 348 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MGTEVAAVVD LRALSQSDLA ALASASPYAV DPRLGRRRDA DFLPPPKIDR SVFNESAGSR 60 KQTFSRHRAA TNISHNLTPA AASSSATASA HTEEDSENRL IVFHLQSLFA RDDPSYPPPP 120 PIQPRPQTLT TPAIAAPAPP APSLPQAADP DREVINPKGA AVDLARLAEL KRTAGLGSEP 180 ELLGFMNSLE GQWGSRRRRR KFVDASMFGD HLPRGWKLLL GLKRKERVAW INCRRYVSPK 240 GHQFATCKEV SSYLISVLGY PEANQTATHS NSASVHGLNS VNQANPAEEK QITIPVSSVA 300 LLSHSGDSHQ QKLQKDESRM GVSAKECRKC NLTFDDQGAY MQHQLSFHQR KAKRRRVSKS 360 DELGASVDGK VQTRECEKTS EEGPGNFDHS VPDVRDQGQS TTNLFDGAFS GELGGKPSMI 420 AAQCVLQQMP ALPQQEKEPS APEMTDLPVL EKGTLNRKRN HNGALMEMTD LPVLEKGPAA 480 GESVSGHHKE PPKMMTSFPE QQNKPVAGDR VFEHHQDPVI NSSDCKINNG ASHNAGASLA 540 VDEESKFSTC NIATIHESYN PKYLQHPSKE CSQMFNRTDE TCSIPKGVSP TSYGPDESKC 600 TDNSVGYNDT TQPKQVGSSP KENNFDNLME NKPLSISLDE RDLNSVDMEV HDASVVCKVV 660 NPPSIENPAV DKSGIRIRDV NLNSCLDTIS SPVSGGNYDT SNTTDDATRS SIIAQCFGTN 720 SNDDNACKDG NLANQNKSSK GENFVNQKND MVYQSNLTMG HIPPAQINVD FFTSELKNYG 780 NRSEDNAKEA LINSRNMTGN ETGFDVEAYN NDIFNGTITE SSLAQLNNAI NMKNDFASCY 840 SLSDLNTLTG GTATDEIDIH GMRNSYVGST SRDEPNGHCT LDIDIKGSML EALEKSDSDL 900 ENQYSGAGPS CDSLPTAGPS GNMDDFMSMQ TNFGSFTSLV RAVEDVPLSR IIQDQCDLQL 960 GFGGPKQPMY PSFEQQLRMA SAGAPPYGGM GRHDSVPVPE PTLMLGYAPQ LGSCPPFQLG 1020 WGASLSKMGA GRVALVVVPY VGA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 355 | QRKAKRRR |
2 | 352 | 356 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886352 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957094.1 | 0.0 | uncharacterized protein LOC101759536 | ||||
TrEMBL | A0A1E5WKC4 | 0.0 | A0A1E5WKC4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01787.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | Pavir.Bb02507.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2687 | 14 | 19 |