PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883898
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 273aa    MW: 29263.2 Da    PI: 9.5899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883898genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000161692021654
                HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                + ++   L++l+ +      +K + a++L +++eYIk L
  462883898 169 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 202
                556666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.363153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-4163207No hitNo description
SuperFamilySSF474591.31E-10163221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8163214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNPSSNNLAL QGHHEQDHGH HHQLLSSLGS ELLLSPTSPY GGIQSSLLRS LMEPTVAKPA  60
ALPGFQQYDQ YQQMGQAPPL QFTNDAAFWN PSAGFGVPVA APAQASSIRV AKTSPAPRAA  120
TLALKSAMEG VGESSSIIAK KANSEPAFKK PRLETPSPLP TFKVRKEKLG DRVTALQQLV  180
APFGKTDTAS VLHETIEYIK FLHDQVSALS APYLKNGHQV PHLKSSSPDK SKDSHGEISL  240
KGRGLCLVPI SSTFAVASEV PVDFWTPFGA NFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883898
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751933e-98EU975193.1 Zea mays clone 484008 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.11e-144transcription factor bHLH112-like
TrEMBLA0A0A8Y3A21e-150A0A0A8Y3A2_ARUDO; Uncharacterized protein
TrEMBLA0A1E5VU631e-149A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.37e-51bHLH family protein