PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 168aa MW: 18512 Da PI: 9.4487 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.5 | 4.6e-22 | 26 | 84 | 33 | 90 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++ e+ 462880850 26 GVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSHSTYgPEK 84 567999*********************************************87554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.5E-4 | 12 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-23 | 22 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-19 | 25 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.0E-19 | 26 | 79 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.942 | 29 | 94 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.92E-18 | 31 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSPTAVDYSS SASTATTESG AAQLPGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR 60 FVREKGLRAG DTIVFSHSTY GPEKQLFIDC KKNKSTPAAT DAAPSPSPME KPKDQAHVVV 120 RLFGVDIARD GCQKRGRPIE IALEQGQQFL KKQCMAQHHT PALGAFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-29 | 19 | 91 | 44 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880850 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065008 | 9e-76 | AK065008.1 Oryza sativa Japonica Group cDNA clone:J013001E21, full insert sequence. | |||
GenBank | AP002913 | 9e-76 | AP002913.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480E02. | |||
GenBank | AP014957 | 9e-76 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT828886 | 9e-76 | CT828886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA058B11, full insert sequence. | |||
GenBank | CU406271 | 9e-76 | CU406271.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113A09, full insert sequence. | |||
GenBank | CU406451 | 9e-76 | CU406451.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110I16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968155.1 | 3e-75 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q0DXB1 | 7e-58 | Y2641_ORYSJ; B3 domain-containing protein Os02g0764100 | ||||
Swissprot | Q9AWS0 | 2e-56 | Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
TrEMBL | K3XJ36 | 6e-74 | K3XJ36_SETIT; Uncharacterized protein | ||||
STRING | Si001909m | 1e-74 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 8e-33 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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