PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880431
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 637aa    MW: 69849.4 Da    PI: 9.0906
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880431genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.9e-161391856
               HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               +F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  462880431  1 MFKESPHPDEKQRQQLSKQLGLSARQVKFWFQNRRTQIK 39
               69*********************************9877 PP
2Homeobox67.81.4e-21118173156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r++ +++t+eq+ ++e++F+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  462880431 118 RKSYHRHTAEQIGVMEAMFKESPHPDEKQRQQLSKQLGLSARQVKFWFQNRRTQIK 173
                788999**********************************************9877 PP
3START135.55.6e-4324940166206
                CCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEE CS
      START  66 lddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgi 152
                + ++ qW+e ++     a+tl v+++g      g++qlm+aelq+l p+vp R++ f+Ry+++lga++w+ vdvS d  ++  +     v ++ + pSg+
  462880431 249 VASN-QWKELFPsmisNASTLSVVQTGedgdqdGVVQLMFAELQMLAPVVPtREVCFLRYCKKLGAEKWATVDVSFDKAEPDAQksAMTVCKCVKKPSGC 347
                4455.9***99999999************************************************************999988765667889******** PP

                EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                +ie+  ngh+kvtwveh+ ++++++++++r    sgla+ga++wva+lq qce+
  462880431 348 IIEEQTNGHCKVTWVEHTTCRDATVPSMYRAATASGLAFGARRWVAALQLQCER 401
                ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-14149IPR009057Homeodomain-like
SMARTSM003894.1E-4145IPR001356Homeobox domain
PfamPF000461.6E-13139IPR001356Homeobox domain
SuperFamilySSF466895.13E-13149IPR009057Homeodomain-like
PROSITE profilePS5007115.37141IPR001356Homeobox domain
CDDcd000861.41E-12239No hitNo description
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.608.9E-23105169IPR009057Homeodomain-like
SuperFamilySSF466895.85E-20107176IPR009057Homeodomain-like
PROSITE profilePS5007117.799115175IPR001356Homeobox domain
SMARTSM003891.0E-18117179IPR001356Homeobox domain
PfamPF000464.5E-19118173IPR001356Homeobox domain
CDDcd000864.57E-17118173No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
SMARTSM002341.8E-26169401IPR002913START domain
PROSITE profilePS5084826.319247404IPR002913START domain
PfamPF018521.1E-34251401IPR002913START domain
SuperFamilySSF559611.87E-16252401No hitNo description
Gene3DG3DSA:3.30.530.205.0E-4281385IPR023393START-like domain
SuperFamilySSF559612.42E-7423514No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MFKESPHPDE KQRQQLSKQL GLSARQVKFW FQNRRTQIKA IQEQQENSLL KSEMEKLQEE  60
NRAMRELIKK PSHCPSCGVA AATEDHLLRL ENARLKTEIE RLPANEGGHG DGGDQKRRKS  120
YHRHTAEQIG VMEAMFKESP HPDEKQRQQL SKQLGLSARQ VKFWFQNRRT QIKAIQEQQE  180
NSLLKSEMEK LQEENRAMRE LIKKPSHCPS CGVAAATEDH LLRLENARLK TEIERLRAST  240
RGGRGADAVA SNQWKELFPS MISNASTLSV VQTGEDGDQD GVVQLMFAEL QMLAPVVPTR  300
EVCFLRYCKK LGAEKWATVD VSFDKAEPDA QKSAMTVCKC VKKPSGCIIE EQTNGHCKVT  360
WVEHTTCRDA TVPSMYRAAT ASGLAFGARR WVAALQLQCE RRVFSVATNI PTRDSIGVAT  420
MAGRRSVLKL AHRMTSSLCR GIGASRGTTW SKAPNGGGVR VTSRTNVSPT ALLDFLRDET  480
RRHEWDVMLP GGSVQSCVNV TKGKDRGNCV TIYGSRTASG SSKTAAWARA SPSSRTRPVD  540
AAALRPVVDG HDSSGVGVLP CGFAVTPDGL DSKPAVITSS KDDDGAAGSL VTLAVQVLAT  600
TASPTDDALP ADSVETVTGM VACTLGNIKK ALRCEDC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880431
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815339.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ROC9-like
SwissprotQ5JMF31e-142ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A446NPY60.0A0A446NPY6_TRITD; Uncharacterized protein
TrEMBLA0A446NQ740.0A0A446NQ74_TRITD; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-115HD-ZIP family protein