PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879584 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26436.8 Da PI: 6.7756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.6e-13 | 67 | 119 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ +hn+ Er RR+++N+ ++ Lr llP a + kKls +++ ++ +YI +Lq 462879584 67 RKLSHNAYERDRRKQLNELYSSLRCLLPDA--DHTKKLSIPTTVSRVLKYIPELQ 119 6889*************************7..35666***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-15 | 64 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.34E-10 | 66 | 122 | No hit | No description |
PROSITE profile | PS50888 | 13.529 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-11 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 67 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-8 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.40.640.10 | 8.8E-4 | 129 | 210 | IPR015421 | Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDHQLFDDPF ASSISSLEAD IFSGGQLASP PWPDLDLDDD DIQGLSPPAA NATSSGGYGS 60 GGSGTHRKLS HNAYERDRRK QLNELYSSLR CLLPDADHTK KLSIPTTVSR VLKYIPELQK 120 QVDNLEKKKK ELTNASCKTG VLNTTESRTP VASATCINDM EIMVQVSLPS NVAGTTLPLS 180 KCIKVLENEG LHLISSSTYS TFENRTFYSL HLQRSQRTMN KECPSFCDEL ERVIRKKAGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879584 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819629.1 | 1e-134 | protein IRON-RELATED TRANSCRIPTION FACTOR 2-like | ||||
Swissprot | A2WZ60 | 1e-110 | IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2 | ||||
TrEMBL | A0A3L6PK74 | 1e-134 | A0A3L6PK74_PANMI; Transcription factor ORG3-like | ||||
STRING | Si002720m | 1e-133 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3280 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 9e-31 | bHLH family protein |