PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462877999

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 368aa MW: 39111.9 Da PI: 6.7091

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462877999	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.3	1.6e-08	190	248	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i eLe+kv+ ++ e ++L +l l+ a l +e+ 462877999 190 KKAKRIINNRQSAARSKERKMRYISELERKVQFMQREATTLSTQLALLQRDTAGLSAEN 248 89*******************************************99999888877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-14	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.703	188	251	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-9	190	245	No hit	No description
Pfam	PF00170	1.3E-7	190	247	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.11E-10	190	242	No hit	No description
CDD	cd14703	1.66E-23	191	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MDQSPIPEGG GVDAGGRGAG NGLSLQYSPG ATLPSPTPHT ECDMSRMPDS PLRRNPGHRR 60 ALSDMIGLPD DLDLGGAPGD GPSLSDENEE ELFSMFLNVD KLNSRGGASV ESESSCVVAA 120 GGGGEPSRVS AAHGAGVKPR HHHSHSMDAS SSISTENLFG APVMDGMSSA EAKKAMSAAK 180 LAELALIDPK KAKRIINNRQ SAARSKERKM RYISELERKV QFMQREATTL STQLALLQRD 240 TAGLSAENNE LKIRLQNTEH QVHLQDALNE ALKSELQRLK VATGQMGNSG GMMNFGGPPH 300 PFGGTQPVFH ANQAVQPFLA MQQHPNMPLH PLQAQQLQQA ALGLNMRGPA AVPSQLSWVE 360 AWSESSSG

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MDQSPIPEGG GVDAGGRGAG NGLSLQYSPG ATLPSPTPHT ECDMSRMPDS PLRRNPGHRR  60
ALSDMIGLPD DLDLGGAPGD GPSLSDENEE ELFSMFLNVD KLNSRGGASV ESESSCVVAA  120
GGGGEPSRVS AAHGAGVKPR HHHSHSMDAS SSISTENLFG APVMDGMSSA EAKKAMSAAK  180
LAELALIDPK KAKRIINNRQ SAARSKERKM RYISELERKV QFMQREATTL STQLALLQRD  240
TAGLSAENNE LKIRLQNTEH QVHLQDALNE ALKSELQRLK VATGQMGNSG GMMNFGGPPH  300
PFGGTQPVFH ANQAVQPFLA MQQHPNMPLH PLQAQQLQQA ALGLNMRGPA AVPSQLSWVE  360
AWSESSSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462877999

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974066.1	1e-172	transcription factor RF2a
Swissprot	Q69IL4	1e-104	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	K3YMV4	1e-171	K3YMV4_SETIT; Uncharacterized protein
STRING	Si015587m	1e-171	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31370.5	4e-41	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]