PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 757aa MW: 84251.4 Da PI: 4.7928 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353.2 | 4.1e-108 | 202 | 505 | 2 | 307 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+a+s+ ++e+aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ + + +l+a+++++e++P++ +++++aN a 462876943 202 KQLLFDCATALSEYNAEQAQAIITQLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCFHLGFMAANYA 298 589*****************************************************************9...89999*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 Ilea +geervHiiDfdi+qG Q+++L+q L + +++p lRiTgv++pe++ l+ +g+rL+k+Ae +gv+fef++ v ++ d+++ +L+++pg 462876943 299 ILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPG 397 **************************************************99878899***********************.799*************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 Eal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e +yysalfdsl+a+lpres +r++vEr++l+reivn++a 462876943 398 EALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILA 497 **************************************************************************************************** PP GRAS 300 cegaerre 307 ceg +r+e 462876943 498 CEGPDRVE 505 *****987 PP | |||||||
2 | GRAS | 275 | 2.3e-84 | 507 | 757 | 124 | 374 |
GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221 Q+++L+q L + +++p lRiTgv++pe++ l+ +g+rL+k+Ae +gv+fef++ v ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ 462876943 507 QYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPGEALVVNFAFQLHHLPDESVSIM 605 9***************************99878899***********************.799************************************* PP GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++ 462876943 606 NERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTM 705 **************************************************************************************************** PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aGFkp p+++++ +++ll+ + ++ y+ +e++g l +gW +++L++ SaW+ 462876943 706 AGFKPCPFNSNVIGGIRSLLKLYCDR-YKFKEDHGGLHFGWGEKTLIVSSAWQ 757 ***********************966.*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.807 | 175 | 738 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-105 | 202 | 505 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-82 | 507 | 757 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MSFVRRADPS TAYSDNLYIH KFAAPSSNFA PRRFPSESQL FRYGPEPYTP EYGHMGFAGV 60 SSAAFQNSLC SQQASLTPYH ITVDGRSTAV ADTQPNSCSD AAKDSPVLSN ISQQNSQSVS 120 DSQSSGIEVE FDEEDIRLKL QELEHALLDD GDDILFEISQ AGSINDEWAD PMKNELIPSS 180 PKESESSISC AVSNNGATLP PKQLLFDCAT ALSEYNAEQA QAIITQLRQM VSIQGDPSQR 240 IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFHL GFMAANYAIL 300 EACKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRLLR ITGVDDPETV QRPIGGLRVI 360 GQRLEKLAED CGVSFEFRAV GANIGDVTPA MLDCHPGEAL VVNFAFQLHH LPDESVSIMN 420 ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYSALFDSLD ATLPRESPDR 480 MNVERQCLAR EIVNILACEG PDRVESQYIT LIQFLKNNAN KPRLLRITGV DDPETVQRPI 540 GGLRVIGQRL EKLAEDCGVS FEFRAVGANI GDVTPAMLDC HPGEALVVNF AFQLHHLPDE 600 SVSIMNERDQ LLRMVKGLQP KLVTLVEQDA NTNTAPFLTR FREVYDYYSA LFDSLDATLP 660 RESPDRMNVE RQCLAREIVN ILACEGPDRV ERYEVAGKWR ARMTMAGFKP CPFNSNVIGG 720 IRSLLKLYCD RYKFKEDHGG LHFGWGEKTL IVSSAWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-48 | 208 | 756 | 26 | 378 | Protein SCARECROW |
5b3h_A | 3e-48 | 208 | 756 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-48 | 208 | 756 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876943 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF534704 | 0.0 | EF534704.1 Aeluropus littoralis scarecrow gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819107.1 | 0.0 | scarecrow-like protein 1 isoform X1 | ||||
Swissprot | Q9SDQ3 | 1e-162 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2S3HPD7 | 0.0 | A0A2S3HPD7_9POAL; Uncharacterized protein | ||||
STRING | Si000832m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5175 | 38 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 1e-158 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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