PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876943
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 757aa    MW: 84251.4 Da    PI: 4.7928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876943genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.24.1e-1082025052307
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cA+a+s+ ++e+aqa++++l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P++ +++++aN a
  462876943 202 KQLLFDCATALSEYNAEQAQAIITQLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCFHLGFMAANYA 298
                589*****************************************************************9...89999*********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                Ilea +geervHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pg
  462876943 299 ILEACKGEERVHIIDFDINQGSQYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPG 397
                **************************************************99878899***********************.799*************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                Eal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++a
  462876943 398 EALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILA 497
                **************************************************************************************************** PP

       GRAS 300 cegaerre 307
                ceg +r+e
  462876943 498 CEGPDRVE 505
                *****987 PP

2GRAS2752.3e-84507757124374
       GRAS 124 QWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsle 221
                Q+++L+q L + +++p  lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d+++ +L+++pgEal+Vn+++qlh+l+desvs+ 
  462876943 507 QYITLIQFLKNNANKPRLLRITGVDDPETVqrPIGGLRVIGQRLEKLAEDCGVSFEFRA-VGANIGDVTPAMLDCHPGEALVVNFAFQLHHLPDESVSIM 605
                9***************************99878899***********************.799************************************* PP

       GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++
  462876943 606 NERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTM 705
                **************************************************************************************************** PP

       GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aGFkp p+++++   +++ll+ + ++ y+ +e++g l +gW +++L++ SaW+
  462876943 706 AGFKPCPFNSNVIGGIRSLLKLYCDR-YKFKEDHGGLHFGWGEKTLIVSSAWQ 757
                ***********************966.*************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.807175738IPR005202Transcription factor GRAS
PfamPF035141.4E-105202505IPR005202Transcription factor GRAS
PfamPF035148.1E-82507757IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MSFVRRADPS TAYSDNLYIH KFAAPSSNFA PRRFPSESQL FRYGPEPYTP EYGHMGFAGV  60
SSAAFQNSLC SQQASLTPYH ITVDGRSTAV ADTQPNSCSD AAKDSPVLSN ISQQNSQSVS  120
DSQSSGIEVE FDEEDIRLKL QELEHALLDD GDDILFEISQ AGSINDEWAD PMKNELIPSS  180
PKESESSISC AVSNNGATLP PKQLLFDCAT ALSEYNAEQA QAIITQLRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCFHL GFMAANYAIL  300
EACKGEERVH IIDFDINQGS QYITLIQFLK NNANKPRLLR ITGVDDPETV QRPIGGLRVI  360
GQRLEKLAED CGVSFEFRAV GANIGDVTPA MLDCHPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVESQYIT LIQFLKNNAN KPRLLRITGV DDPETVQRPI  540
GGLRVIGQRL EKLAEDCGVS FEFRAVGANI GDVTPAMLDC HPGEALVVNF AFQLHHLPDE  600
SVSIMNERDQ LLRMVKGLQP KLVTLVEQDA NTNTAPFLTR FREVYDYYSA LFDSLDATLP  660
RESPDRMNVE RQCLAREIVN ILACEGPDRV ERYEVAGKWR ARMTMAGFKP CPFNSNVIGG  720
IRSLLKLYCD RYKFKEDHGG LHFGWGEKTL IVSSAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4820875626378Protein SCARECROW
5b3h_A3e-4820875625377Protein SCARECROW
5b3h_D3e-4820875625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347040.0EF534704.1 Aeluropus littoralis scarecrow gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ31e-162SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2S3HPD70.0A0A2S3HPD7_9POAL; Uncharacterized protein
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-158SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]