PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462876582
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 1046aa    MW: 116462 Da    PI: 6.2228
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462876582genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.34e-55211373118
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 e ++rwl+++ei++iL n++ ++++ e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqrr+ywl
  462876582  21 AEaQNRWLRPTEICEILSNYKFFSIAPEPPNMPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQRRTYWL 120
                4449************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylevk 118
                Lee++++ivlvhylevk
  462876582 121 LEEDFTHIVLVHYLEVK 137
                **************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.28116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-7519137IPR005559CG-1 DNA-binding domain
PfamPF038595.2E-4922136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-8462551IPR013783Immunoglobulin-like fold
CDDcd001022.98E-4463551No hitNo description
PfamPF018331.5E-7464547IPR002909IPT domain
SuperFamilySSF812963.89E-18464550IPR014756Immunoglobulin E-set
CDDcd002044.08E-13632755No hitNo description
SuperFamilySSF484034.35E-16642757IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-17652758IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.139663757IPR020683Ankyrin repeat-containing domain
SMARTSM002480.048696725IPR002110Ankyrin repeat
PROSITE profilePS5008810.179696728IPR002110Ankyrin repeat
SMARTSM00248990735764IPR002110Ankyrin repeat
SuperFamilySSF525404.78E-8865920IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791870899IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056871890IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012892914IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249893917IPR000048IQ motif, EF-hand binding site
PfamPF006125.5E-4895914IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MAEARKFVMP GQPPDFSQLL AEAQNRWLRP TEICEILSNY KFFSIAPEPP NMPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGGK QSLNRAKEEI MQFSNVDSPS YSNSITSQSQ TAPQNMDAAE  180
SPISGQISEF GDTKSAKFGA ADNSGASSRY HPLAEMQQPL DGVIMDDLLY PPASSIGDRQ  240
GYHGEMLPRT SNLDYHSFSH HDIARLFEDA GTGPGDVSRT LFDSVPFNET LTDYPNGFTE  300
PALHSSFASL EASSLEDSSR LQTFTSEALY TNHLSQKEIE ALYANHLSQK EPDALSFAGI  360
SSPEPEVNGN RYTEGSIKHP LLKQSSLDLL KIESTGLKKH DSFSRWMSKE LAGVVDLDIK  420
SSSDTLWSSI ESVNVSDGSS VLTNEQLGAY VVSPSLSQDQ LFSILDVSPS CAYIGLNTKV  480
MVTGTFLVNK EHVEKCTWSC MFGDVEVPAE VLNDGTLRCY APAHQSGRVP FYVTCSNRVA  540
CSEVREFEYR DSDAQYMETS HSQAIGVNEM HLHIRLEKLL SLGPENNDML VLSSGNEKHE  600
LMNAINSLML DGKWSDQESP SVKEIISTAR DHGLEKLVKE KLHYWLLCKI NDDGKGPNVL  660
CKEGQGAIHL VSALGYDWAI RPIIVAGVNV NFRDAHGWTA LHWAASMGRE RTVGILIANG  720
AAAGALTDPT SEFPAGRSPA DLASANGHKG IAGFLAESAL TSHLSALTIR ESKDNAVEVC  780
GLPVADDLND TDSAQLAGDD YQTESLKGSL SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY  840
GDDDCGLSDE RTLSLVSLKN VKPGQHDTHL HSAAVRIQNK FRGWKGRKEF MIIRQRIVKL  900
QAHVRGHQVR KNYRKVVWSV GIVEKVILRW RRKRTGLRGF RPDKQLEGSS EIQPAKAEDD  960
YDFLHDGRKQ AEARLQRALA RVHSMSQYPE AREQYNRLTT CVAEMKQARI MQDEMLNESA  1020
APDGNDFMAG LEDLICRDDA AMSAIW
Cis-element ? help Back to Top
SourceLink
PlantRegMap462876582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021316757.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLC5WXQ80.0C5WXQ8_SORBI; Uncharacterized protein
STRINGSb01g033650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein