PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462873030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | SBP | ||||||||
Protein Properties | Length: 286aa MW: 31309.1 Da PI: 9.005 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.1 | 6e-39 | 16 | 91 | 3 | 78 |
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +vegC dl akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ 462873030 16 HVEGCGLDLGGAKEYHRKHRVCEAHTKCPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 91 59***********************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 30.128 | 12 | 89 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-29 | 16 | 88 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.1E-30 | 16 | 76 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-36 | 17 | 94 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDPSPYIPIQ PKGGNHVEGC GLDLGGAKEY HRKHRVCEAH TKCPRVVVAG QERRFCQQCS 60 RFHALSEFDQ KKRSCRRRLS DHNARRRKPQ PDAFAFASAR LPSSLFDDRR QISFVWNKAP 120 LSHVRPFTSP WDSTSDFKLP HAKEIREISA KVGTIAGQVH LDKSHLSSAV PSLSHGKDEL 180 LPVKGPNTSV TASKFDGAPD LQRALSLLSA GSCGFPDPVQ QASCLIQFSG ASENSSDLRS 240 SHGGSSALAS CADEQHIAPQ SQLVRFTMDT GSNGYDSTFF GLNQIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-23 | 17 | 88 | 13 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 87 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462873030 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951747.1 | 1e-178 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 2e-97 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | K3YU03 | 1e-177 | K3YU03_SETIT; Uncharacterized protein | ||||
STRING | Si017749m | 1e-178 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 2e-44 | squamosa promoter binding protein-like 10 |