PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462868533
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 985aa    MW: 109414 Da    PI: 5.5826
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462868533genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.89.9e-54221392118
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n +fqrr+yw
  462868533  22 LKEaQHRWLRPAEICEILKNYKNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDNINFQRRTYW 121
                45559*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylevk 118
                +Lee++ +ivlvhyle+k
  462868533 122 MLEEDFMHIVLVHYLETK 139
                ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.0418144IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7321139IPR005559CG-1 DNA-binding domain
PfamPF038593.0E-4824137IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-5408494IPR013783Immunoglobulin-like fold
PfamPF018335.6E-6409487IPR002909IPT domain
SuperFamilySSF812964.4E-16409495IPR014756Immunoglobulin E-set
SuperFamilySSF484032.33E-16602704IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-17604706IPR020683Ankyrin repeat-containing domain
CDDcd002044.04E-13604702No hitNo description
PROSITE profilePS5029717.422610704IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.549610642IPR002110Ankyrin repeat
PROSITE profilePS500888.549643675IPR002110Ankyrin repeat
SMARTSM002480.023643672IPR002110Ankyrin repeat
SMARTSM002481400682711IPR002110Ankyrin repeat
SMARTSM000150.15804826IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.7E-8805855IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.425805834IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056807825IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011827849IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.871828852IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4830849IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MASASDARRL AVVPQLDIQQ ILKEAQHRWL RPAEICEILK NYKNFRIAPE PPNRPPSGSL  60
FLFDRKVLRY FRKDGHNWRK KNDQKTVKEA HERLKSGSID VLHCYYAHGE DNINFQRRTY  120
WMLEEDFMHI VLVHYLETKG GKSHRARGNN NMIQEAVVDS PLSQLPSHTI EGESSVSGQA  180
SEYEEAESGS YQGLHSMAHN TSIYSGAQDN SSLVLDGSSP VFTLNGHASQ NDLPSWNEVV  240
RLDNGPVQMP PLQFPVLPEQ GTSMEGMGVD YLTFDEVYSD GLSLNDVSAA GADAESFWQL  300
SSGTGDMSAM ENSFQQNDGS LEAAIGYPFL KTQSSSLSDI LKDSFKKSDS FTRWMSKELP  360
EVEDSQIQSS SGAYWSTEEA DSIIEASSRE PLDQFTLAPM VSQDQLFSIV DFAPTWTYVG  420
SKTKILIIGT ILNNSQVNEK CKWSCMFGEV EVPAEMLADG SLFCYSPSHK PGRVPFYITC  480
SNRLACSEVR EFEFRPSDSS YMDAPSPHGA TNKVYFQIRL DKLVSLGQDE YQATISNPSV  540
EMIDLSNKIS SLMMNNDEWS NLLKLADDNE LSTDDQKDQF AENLIKEKLR IWLLNKAGVG  600
GKGPSVLDDE GQGVLHLAAA LGYDWAIRPT VSAGVNINFR DVHGWTALHW AAFCGRERTV  660
VALVALGAAP GALTDPTPDF PSGSTPADLA SANGHKGISG FLAESSLTSH LQALNLKEAN  720
MGEISGLPGI GDVTERTSLQ PASGDSLGAV RNAAQAAARI YQVFRVQSFQ RKQAAQYEDA  780
KGGISDERAL SFLSVKPSKP GQDPLNAAAT RIQNKFRGWK GRKEFLLIRQ RIVKIQAHVR  840
GHQARKHYRK IVWSVGIVEK VILRWRRRGA GLRGFRSTEG ATEGSSGGTS SSLIQNKPAR  900
DDYDFLQEGR KQTEERLQKA LARVKSMAQY PEARDQYQRI LTVVSKMQES QAQQEKMLEE  960
STDMNEADFM SEFKELWDDD TPIPG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462868533
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793388.10.0calmodulin-binding transcription activator 3-like isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A3L6TUJ20.0A0A3L6TUJ2_PANMI; Calmodulin-binding transcription activator 3-like isoform X2
STRINGPavir.Ia02749.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]