PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462864718

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Dof

Protein Properties

Length: 542aa MW: 59420.2 Da PI: 4.8009

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462864718	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	161	220	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s 462864718 161 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 220 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-32	147	218	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.5E-32	163	219	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	165	219	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	167	203	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MSDQKDPGIK LFGRVIPLAT EAEEPARWDQ PSELAPPPLE DAAAAADEVQ HKEKDEEEDS 60 EMKIDAIQEE KDNMKVDAPE EEKETEMKVD AQREKEVEEM KANGPHEMEN VKPDKSATLD 120 HEKDDKGQMN NAEDKAEPDQ KGDDAKTASD ESGQDRTLKK PDKILPCPRC NSMETKFCYY 180 NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKSKNS SLHYRQLLMA PDCMMGSRVD 240 ISKSLHPEAL ASSSASMIHA TSRNETVLKF GPEVPFCESM VSALNIEEQN VTNAGSAPQG 300 PQGESREGNS CASSVIYNGP TENTVPFDKN GAPVYCNGVT PVPQYYLGAP FMYPWNVGWN 360 NVPVMVPGRS MPDSASASEA CSTSSAPWMN SPMMPSSRLP GPAFPYPLMP PALWGCLSGW 420 PATTWNIPWI RTNGCLSPPS SSNSNCSGNG SPTLGKHSRD SNPLKEEKEK SLWVPKTLRI 480 DDPDDAAKSS IWATLGIKPG DPGTFKPFQS KVESKDQTKD AAQVLQANPA ALSRSQSFQE 540 SS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MSDQKDPGIK LFGRVIPLAT EAEEPARWDQ PSELAPPPLE DAAAAADEVQ HKEKDEEEDS  60
EMKIDAIQEE KDNMKVDAPE EEKETEMKVD AQREKEVEEM KANGPHEMEN VKPDKSATLD  120
HEKDDKGQMN NAEDKAEPDQ KGDDAKTASD ESGQDRTLKK PDKILPCPRC NSMETKFCYY  180
NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKSKNS SLHYRQLLMA PDCMMGSRVD  240
ISKSLHPEAL ASSSASMIHA TSRNETVLKF GPEVPFCESM VSALNIEEQN VTNAGSAPQG  300
PQGESREGNS CASSVIYNGP TENTVPFDKN GAPVYCNGVT PVPQYYLGAP FMYPWNVGWN  360
NVPVMVPGRS MPDSASASEA CSTSSAPWMN SPMMPSSRLP GPAFPYPLMP PALWGCLSGW  420
PATTWNIPWI RTNGCLSPPS SSNSNCSGNG SPTLGKHSRD SNPLKEEKEK SLWVPKTLRI  480
DDPDDAAKSS IWATLGIKPG DPGTFKPFQS KVESKDQTKD AAQVLQANPA ALSRSQSFQE  540
SS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462864718

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457611.1	0.0	cyclic dof factor 2 isoform X1
Refseq	XP_025815271.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A1D8RJ04	0.0	A0A1D8RJ04_ELECO; DNA-binding with one finger protein 15
STRING	Sb03g010280.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-70	cycling DOF factor 2