PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462864485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 17885.3 Da PI: 12.1366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 21 | 71 | 4 | 56 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +GVr ++ +gr++AeIrd +++ r+r++lg+f+t+eeAa+a++aa++kl+g+ 462864485 21 RGVRKRP-WGRYAAEIRDpVRKA--RARVWLGTFDTPEEAARAYDAAARKLRGP 71 9******.**********55332..5**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.7E-26 | 19 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 19 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-19 | 20 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 20 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-26 | 21 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.58E-14 | 21 | 80 | No hit | No description |
PRINTS | PR00367 | 4.9E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MAPRRSTSPA GSSGELAGRL RGVRKRPWGR YAAEIRDPVR KARARVWLGT FDTPEEAARA 60 YDAAARKLRG PGAATHYPDT TPTLVAQRNR AVGAVVIFTP VAGPEPRTAS GGGGRAAAVP 120 VLLPDGGRER RAGADPVLAA QGRRARAERA GFLQVLVLVD HGRRDAGGGP G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 18 | 78 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462864485 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Fb00952.1.p | 1e-28 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 4e-20 | ERF domain protein 11 |