PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860770
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 980aa    MW: 110027 Da    PI: 7.3942
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860770genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065734759123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C+   C+++F  k n++rHi+  H
  462860770 734 FSCTvdGCDRRFGIKANMQRHIKEiH 759
                899999*****************988 PP
2zf-C2H216.42.7e-05771794123
                EEET.TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                ++C+  C+ksF+  s Lk+H  +H
  462860770 771 FVCKeGCNKSFKYLSRLKKHEESH 794
                89******************9988 PP
3zf-C2H214.97.8e-05861885223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL++H++  H
  462860770 861 KCTfeGCEHTFSNKSNLTKHMKAcH 885
                799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.1633565IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.71266100IPR002885Pentatricopeptide repeat
PfamPF015350.0346897IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.001668101IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-77698IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.147136166IPR002885Pentatricopeptide repeat
PfamPF015350.14141166IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.068167197IPR002885Pentatricopeptide repeat
PfamPF015350.48169197IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.315198232IPR002885Pentatricopeptide repeat
PfamPF015352.8E-4200229IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.8E-5200233IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-7263295IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.177268298IPR002885Pentatricopeptide repeat
PfamPF015350.0014273296IPR002885Pentatricopeptide repeat
PfamPF130411.2E-11298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.937299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.0E-8301335IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.076334364IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0021336363IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.73370400IPR002885Pentatricopeptide repeat
PfamPF015350.13373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-7397467IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.338402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.5436470IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.802530560IPR002885Pentatricopeptide repeat
PfamPF015350.0033532559IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.73566596IPR002885Pentatricopeptide repeat
PfamPF015350.13569593IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.4E-7597655IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.338598628IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.5632666IPR002885Pentatricopeptide repeat
SuperFamilySSF576679.9E-7732760No hitNo description
Gene3DG3DSA:3.30.160.603.9E-8732761IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219734764IPR007087Zinc finger, C2H2
SMARTSM003550.0013734759IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280736759IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-5767794IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.575771794IPR007087Zinc finger, C2H2
SMARTSM003550.13771794IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280773794IPR007087Zinc finger, C2H2
SMARTSM003557.4802827IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280804827IPR007087Zinc finger, C2H2
SMARTSM0035515830851IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.02E-8845902No hitNo description
PROSITE profilePS5015711.884860890IPR007087Zinc finger, C2H2
SMARTSM003550.012860885IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-6861885IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280862885IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-4886913IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9891917IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280893917IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MNRSVCHHLL AQCKTLRELQ KIHAQALAHG LHPGHQSVSC KLFRRYADFG RPSDAHKLFD  60
EIPSPDLVSF TSLMSLHIQL DRYREAVSLF SHIVASGHRP DGFAVVGALS ASGAVGDLGV  120
GKAVHGLIFR HGLNSEVVVG NALIDLYSRC AKFNSAQMVF DRMIVKDEVT WGSMLHGHIK  180
CAGVDSALTF FDHMPVKSVV SWTALITGLV QGKQPVQALE LFGRMVLAGH RPTHVTIVGV  240
LSACADIGAL DLGRVIHGYG SKYNINKNII VSNALMDMYA KSGSIEMAFS VFEEVQLKDA  300
FTWTTMISSF TVQGNGMKAL ELFSDMLRSG VVPNSVTYVS VLSACSHAGL IEEGRQLFGT  360
MREIYNIDPQ LEHYGCIIDL LARGGLLEEA EALIADMNME PDIVIWRSLL SACLVHGNDR  420
LAEIAGKEII KREPGDDGVH VLLWNMYASS NRWTEAREMR HQMLTRKIFK QPGCSWIEVD  480
GVVHEFLVED KTHIARREIY KTLECMAKEF KIDLSSSSWE QIDCVGVVPN SVTYVSVLSA  540
CSHAGLIKEG RQLFGTMREI YNIDPQLEHY GCIIDLLARG GLLEEAEALI ADMNMEPDIV  600
IWRSLLSACL VHGNDRLAEI AGKEIIKREP GDDGVHVLLW NMYASSNRWT EAREMRHQML  660
TRKIFKQPGC SWIEVDGVVH EFLVEDKTHI ARREIYKTLE CGFEKMHKDP ISKCHLRKLG  720
PFFIGPQLAM GKLFSCTVDG CDRRFGIKAN MQRHIKEIHE DENTAKSDQQ FVCKEGCNKS  780
FKYLSRLKKH EESHVKLNYV EVVCCVPGCM KMFTNVECLR AHNQSCHQYI QCEICGEKHL  840
KKNIKRHLQA HEEVPSSERM KCTFEGCEHT FSNKSNLTKH MKACHDNVKP FSCRFAGCDK  900
AFTYKHVRDN HEQSSAHGDF EEIDAQLQSR PRGGRKRKSL TVETLTRKRV TIPGQASATD  960
DGVEYLRWLL SGGDGSSQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-6196093331PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1929937RPRGGRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795590.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
TrEMBLA0A2T7F0Z00.0A0A2T7F0Z0_9POAL; Uncharacterized protein
STRINGSb08g001305.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-72transcription factor IIIA