PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462860436
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 690aa    MW: 78210.1 Da    PI: 5.6631
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462860436genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-0897120327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +f++ G C  GdrC+F Hgp
  462860436  97 MVPCYYFQK-GNCIKGDRCPFYHGP 120
                789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.5681342IPR000571Zinc finger, CCCH-type
SMARTSM003560.0151441IPR000571Zinc finger, CCCH-type
PfamPF156632.4E-121569No hitNo description
PROSITE profilePS5010312.1834470IPR000571Zinc finger, CCCH-type
SMARTSM003560.0414669IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90194121IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-694120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-595119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-596120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-498120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
AGAKPLTPEE EALRRNTDCV YFLVSPLTCK KGNECDFRHS DGARMNPRDC WYWMNGNCMN  60
PKCPFRHPPI DGLFGAPTPG VPSVSSHYGA YNSGKQMVPC YYFQKGNCIK GDRCPFYHGP  120
QAVGNNPPEQ VARVSSFPLE QPQAQKREAS TEPNNLMQQG APIIGDRSKL AVDRSMVHAA  180
KNGVAALPSE LASNSVKSRL KSEKVPNTSA VKKSFMTAEE DHSACYQNQL APDGGPMQDW  240
NQDFTMPPTD DLPQNSRDAD DFLGESSPGF DVLVDNDADG AAYLHDEEDF GRDMYPVEDY  300
EYAPADFDMQ AHHERERFNG MDEHNQIGRL YDGYERKRRR SSPERSMDRP FHSDRRFAHR  360
EINRADMDRS DLRHQIRRRR INASSAAISP ERNIEQHRRG EHYRERAHGH HTHRDRHQGS  420
RGSTLSSRLK GRIKLPGRSP DRFDTRFENE RDRKRLRDRL SPVRHDVHGG HREAGQHHER  480
SQRRPSELAS SVRHADGRYS RRDAVDSVHL SARKNLGEPR KANGIMDSEP SLDFEGPKPL  540
SVILQRKREA AVSNNSSSSC EKSAEAAARQ PGSLVEAEKK DFENNISSEY CKSGSGDEEY  600
KEDEDQVPVE GQGQSSSHGD KFDVEDITEV DPSTTQDADN YEQREGESDD YETMEGHEYK  660
SEDENAYQDD EDFDDDDDDD FARKVGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335339RKRRR
2335340RKRRRS
3452458RKRLRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462860436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3L6PV300.0A0A3L6PV30_PANMI; Uncharacterized protein
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]