PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462858742 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 29142.3 Da PI: 6.374 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.4 | 1.9e-21 | 88 | 148 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ 462858742 88 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 148 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.4 | 6.5e-33 | 87 | 150 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq 462858742 87 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 83 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 84 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-14 | 86 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-18 | 87 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.45E-15 | 88 | 150 | No hit | No description |
Pfam | PF00046 | 3.1E-19 | 88 | 148 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEWGNGAKAS AADERGGGGE PLGYVQVMTD EQMEVLRKQI SIYATICEQL VEMHRALTEH 60 QDSIAGMRFS NLYCDPLIVP GGHKITARQR WQPTPMQLQI LENIFDQGNG TPSKQKIKEI 120 TAELSHHGQI SETNVYNWFQ NRRARSKRKQ AASLPNNAES EAEVDEESLT DKKPKSDRIL 180 QQTNVHNADR ISEMHHLEHN QMGGMMYGSN DNNFRPSGSS GQMSFYENIM SNPRIDHFPG 240 KVESSRGYSH LQHGEGFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462858742 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288365.1 | 1e-161 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-124 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | C0P6K0 | 1e-159 | C0P6K0_MAIZE; HB transcription factor | ||||
TrEMBL | K4JE98 | 1e-159 | K4JE98_MAIZE; HB-type transcription factor (Fragment) | ||||
STRING | GRMZM2G038252_P02 | 1e-161 | (Zea mays) | ||||
STRING | GRMZM2G069274_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 8e-59 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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