PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462856600

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 262aa MW: 28714.2 Da PI: 6.263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462856600	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	38	85	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 r++ + erE+ Rd++N+ f eL ++l ++ + + Ka iL +++ ++ 462856600 38 RKVHKAEREKLKRDHLNDLFIELGDMLDED----RQNNGKACILADTTRILR 85 677889*********************997....455666667766666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-11	34	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-9	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.518	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVPSDRGSVA TAVSTAAATD KLLHGHVSGK KIQKKAPRKV HKAEREKLKR DHLNDLFIEL 60 GDMLDEDRQN NGKACILADT TRILRDLLSQ VESLRKENST LQNESHYVTT ERDELRDETS 120 ALGKEILELQ NELRTRLSSN SGWGHGAAES DSINAVFPLP QQVQPPSMAS PVIPLQQPLP 180 SQTVIELPYA ATPRELKLFP KAGFEPVEGQ EATNNVARPQ ARYPTRAASW PVSLFSGLPG 240 MEDEQSSSTT IGSSKEASTG RD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269\|PubMed:25617318}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462856600

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148562.1	1e-115	amelogenin precursor like protein
Refseq	XP_008676027.1	1e-115	amelogenin precursor like protein isoform X1
Refseq	XP_008676033.1	1e-115	amelogenin precursor like protein isoform X1
Refseq	XP_008676036.1	1e-115	amelogenin precursor like protein isoform X1
Swissprot	Q69V10	2e-81	BH062_ORYSJ; Transcription factor BHLH062
TrEMBL	B6T4L8	1e-114	B6T4L8_MAIZE; Amelogenin like protein
STRING	GRMZM2G350312_P02	1e-114	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2481	38	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	9e-37	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Wu H,Ye H,Yao R,Zhang T,Xiong L OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice. Plant Sci., 2015. 232: p. 1-12 [PMID:25617318]