PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462854944

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Trihelix

Protein Properties

Length: 1161aa MW: 128064 Da PI: 8.6251

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462854944	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.2	1.4e-20	1069	1149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r em+er+++ k ++ lWee+s + +g++r+p qCk+ w +l ++y++ k+ e+++ +t+p+f++++ 462854944 1069 KWKPEEIKSLIQMRGEMNERFQSVKGRMVLWEEISGSLLNQGISRTPAQCKSLWTSLVQKYEESKKDEESK-----KTWPHFSSMD 1149 7****************************************************************9984.....78*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	8.7E-23	138	211	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	1.44E-18	139	222	IPR001279	Metallo-beta-lactamase
Pfam	PF00753	4.7E-5	152	211	IPR001279	Metallo-beta-lactamase
Gene3D	G3DSA:3.60.15.10	5.9E-68	251	501	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	3.01E-57	252	580	IPR001279	Metallo-beta-lactamase
SMART	SM00849	6.3E-25	264	461	IPR001279	Metallo-beta-lactamase
Pfam	PF12706	9.3E-11	276	411	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	2.23E-6	588	710	IPR001279	Metallo-beta-lactamase
PROSITE profile	PS50090	7.712	1062	1126	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	1066	1128	IPR009057	Homeodomain-like
SMART	SM00717	0.0081	1066	1128	IPR001005	SANT/Myb domain
Pfam	PF13837	3.6E-17	1068	1151	No hit	No description
CDD	cd12203	3.28E-22	1068	1133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence Send to blast
NPKLEKDQAE GRRSEPARDG SRYLLRFPPS PCSLCTSPLP LPAPFSTAAA MVALTSVSSL 60 CPCGLSRRLS ALAPASASAS VSATISCCAV ATPSSGKGPH VSRTPRGRLR RTEGATKSLE 120 DSVKRKMEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDEFGV 180 QKIIPDTTFI KKWSHKIEAV IITHGHEDHI GPHVSRTPRG RLRRTEGATK SLEDSVKRKM 240 EQFYEGLDGP PLRVLPIGGL GEIGMNCMLV GNYDRYILID AGVMFPDYDE FGVQKIIPDT 300 TFIKKWSHKI EAVIITHGHE DHIGALPWVI PALDSTTPIY ASSFTMELIK KRLKEFGIFL 360 SSRLKTFRVK KRFQAGPFEV EPIRVTHSIP DCCGLVLRCD DGIIFHTGDW KIDESPVDGK 420 IFDRQALEEL SKEGVTLMMS DSTNVLSPGR SISESVVAGS LLRHVSEAKG RVITTQFASN 480 IHRIGSIKAA ADLTGRKLVF VGMSLRTYLE AAFKDGKAPL DPSTLYKHLQ VKAEDMDAYA 540 PKDLLVVTTG SQGEPRAALN LASYGGSHAL KLTKEDVLLY SAKYKHLQVK AEDMDAYAPK 600 DLLVVTTGSQ GEPRAALNLA SYGGSHALKL TKEDVLLYSA KVIPGNETRV MKMMNRLTDL 660 GPKIEEVLQI VKPQHFLPVH GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV 720 LSNGFVSLGK QDFQLMYSDG DKAFGTSTDL CVDERLRIAS DGIIFVSMEI FRPHREHASA 780 QSAAHAALSS CPVNCPLSHM ERMVSEILRK MLMYSDGDKA FGTSTDLCVD ERLRIASDGI 840 IFVSMEIFRP HREHASAQSG LKGKFKITTR CLWLDNGRLL DALYKAAHAA LSSCPVNCPL 900 SHMERMVSEI LRKMVRKYSG KRPDVIAVAT ENTTVGFAEN LESKSSGNIG PSSATSHLSR 960 SPAQSLEGSH KTRPDGPEME TEETLPEEER TSPDDATTSS NGEVFFSSDL HKPKTLEHFW 1020 ESFKSPTAVK IARIVNGQGN RPKVSKIGIM GKDSTQSALA PVTSPKKNKW KPEEIKSLIQ 1080 MRGEMNERFQ SVKGRMVLWE EISGSLLNQG ISRTPAQCKS LWTSLVQKYE ESKKDEESKK 1140 TWPHFSSMDR ILSCEGEMAT K

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence Send to blast

NPKLEKDQAE GRRSEPARDG SRYLLRFPPS PCSLCTSPLP LPAPFSTAAA MVALTSVSSL  60
CPCGLSRRLS ALAPASASAS VSATISCCAV ATPSSGKGPH VSRTPRGRLR RTEGATKSLE  120
DSVKRKMEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDEFGV  180
QKIIPDTTFI KKWSHKIEAV IITHGHEDHI GPHVSRTPRG RLRRTEGATK SLEDSVKRKM  240
EQFYEGLDGP PLRVLPIGGL GEIGMNCMLV GNYDRYILID AGVMFPDYDE FGVQKIIPDT  300
TFIKKWSHKI EAVIITHGHE DHIGALPWVI PALDSTTPIY ASSFTMELIK KRLKEFGIFL  360
SSRLKTFRVK KRFQAGPFEV EPIRVTHSIP DCCGLVLRCD DGIIFHTGDW KIDESPVDGK  420
IFDRQALEEL SKEGVTLMMS DSTNVLSPGR SISESVVAGS LLRHVSEAKG RVITTQFASN  480
IHRIGSIKAA ADLTGRKLVF VGMSLRTYLE AAFKDGKAPL DPSTLYKHLQ VKAEDMDAYA  540
PKDLLVVTTG SQGEPRAALN LASYGGSHAL KLTKEDVLLY SAKYKHLQVK AEDMDAYAPK  600
DLLVVTTGSQ GEPRAALNLA SYGGSHALKL TKEDVLLYSA KVIPGNETRV MKMMNRLTDL  660
GPKIEEVLQI VKPQHFLPVH GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV  720
LSNGFVSLGK QDFQLMYSDG DKAFGTSTDL CVDERLRIAS DGIIFVSMEI FRPHREHASA  780
QSAAHAALSS CPVNCPLSHM ERMVSEILRK MLMYSDGDKA FGTSTDLCVD ERLRIASDGI  840
IFVSMEIFRP HREHASAQSG LKGKFKITTR CLWLDNGRLL DALYKAAHAA LSSCPVNCPL  900
SHMERMVSEI LRKMVRKYSG KRPDVIAVAT ENTTVGFAEN LESKSSGNIG PSSATSHLSR  960
SPAQSLEGSH KTRPDGPEME TEETLPEEER TSPDDATTSS NGEVFFSSDL HKPKTLEHFW  1020
ESFKSPTAVK IARIVNGQGN RPKVSKIGIM GKDSTQSALA PVTSPKKNKW KPEEIKSLIQ  1080
MRGEMNERFQ SVKGRMVLWE EISGSLLNQG ISRTPAQCKS LWTSLVQKYE ESKKDEESKK  1140
TWPHFSSMDR ILSCEGEMAT K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	4e-61	139	769	19	483	RIBONUCLEASE J
5a0t_B	4e-61	139	769	19	483	RIBONUCLEASE J
5a0v_A	4e-61	139	769	19	483	RIBONUCLEASE J
5a0v_B	4e-61	139	769	19	483	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462854944

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451689.1	0.0	uncharacterized protein LOC8079424 isoform X2
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A3L6RMV1	0.0	A0A3L6RMV1_PANMI; Ribonuclease J isoform X1
STRING	Pavir.Ab01874.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4996	35	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]