PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462854944 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 1161aa MW: 128064 Da PI: 8.6251 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.2 | 1.4e-20 | 1069 | 1149 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r em+er+++ k ++ lWee+s + +g++r+p qCk+ w +l ++y++ k+ e+++ +t+p+f++++ 462854944 1069 KWKPEEIKSLIQMRGEMNERFQSVKGRMVLWEEISGSLLNQGISRTPAQCKSLWTSLVQKYEESKKDEESK-----KTWPHFSSMD 1149 7******************************************************************9984.....78*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 8.7E-23 | 138 | 211 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 1.44E-18 | 139 | 222 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF00753 | 4.7E-5 | 152 | 211 | IPR001279 | Metallo-beta-lactamase |
Gene3D | G3DSA:3.60.15.10 | 5.9E-68 | 251 | 501 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 3.01E-57 | 252 | 580 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 6.3E-25 | 264 | 461 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 9.3E-11 | 276 | 411 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.23E-6 | 588 | 710 | IPR001279 | Metallo-beta-lactamase |
PROSITE profile | PS50090 | 7.712 | 1062 | 1126 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 1066 | 1128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0081 | 1066 | 1128 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 3.6E-17 | 1068 | 1151 | No hit | No description |
CDD | cd12203 | 3.28E-22 | 1068 | 1133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1161 aa Download sequence Send to blast |
NPKLEKDQAE GRRSEPARDG SRYLLRFPPS PCSLCTSPLP LPAPFSTAAA MVALTSVSSL 60 CPCGLSRRLS ALAPASASAS VSATISCCAV ATPSSGKGPH VSRTPRGRLR RTEGATKSLE 120 DSVKRKMEQF YEGLDGPPLR VLPIGGLGEI GMNCMLVGNY DRYILIDAGV MFPDYDEFGV 180 QKIIPDTTFI KKWSHKIEAV IITHGHEDHI GPHVSRTPRG RLRRTEGATK SLEDSVKRKM 240 EQFYEGLDGP PLRVLPIGGL GEIGMNCMLV GNYDRYILID AGVMFPDYDE FGVQKIIPDT 300 TFIKKWSHKI EAVIITHGHE DHIGALPWVI PALDSTTPIY ASSFTMELIK KRLKEFGIFL 360 SSRLKTFRVK KRFQAGPFEV EPIRVTHSIP DCCGLVLRCD DGIIFHTGDW KIDESPVDGK 420 IFDRQALEEL SKEGVTLMMS DSTNVLSPGR SISESVVAGS LLRHVSEAKG RVITTQFASN 480 IHRIGSIKAA ADLTGRKLVF VGMSLRTYLE AAFKDGKAPL DPSTLYKHLQ VKAEDMDAYA 540 PKDLLVVTTG SQGEPRAALN LASYGGSHAL KLTKEDVLLY SAKYKHLQVK AEDMDAYAPK 600 DLLVVTTGSQ GEPRAALNLA SYGGSHALKL TKEDVLLYSA KVIPGNETRV MKMMNRLTDL 660 GPKIEEVLQI VKPQHFLPVH GELLFLKEHE LLGRSTGIRH TTVIKNGEML GVSHLRNRRV 720 LSNGFVSLGK QDFQLMYSDG DKAFGTSTDL CVDERLRIAS DGIIFVSMEI FRPHREHASA 780 QSAAHAALSS CPVNCPLSHM ERMVSEILRK MLMYSDGDKA FGTSTDLCVD ERLRIASDGI 840 IFVSMEIFRP HREHASAQSG LKGKFKITTR CLWLDNGRLL DALYKAAHAA LSSCPVNCPL 900 SHMERMVSEI LRKMVRKYSG KRPDVIAVAT ENTTVGFAEN LESKSSGNIG PSSATSHLSR 960 SPAQSLEGSH KTRPDGPEME TEETLPEEER TSPDDATTSS NGEVFFSSDL HKPKTLEHFW 1020 ESFKSPTAVK IARIVNGQGN RPKVSKIGIM GKDSTQSALA PVTSPKKNKW KPEEIKSLIQ 1080 MRGEMNERFQ SVKGRMVLWE EISGSLLNQG ISRTPAQCKS LWTSLVQKYE ESKKDEESKK 1140 TWPHFSSMDR ILSCEGEMAT K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 4e-61 | 139 | 769 | 19 | 483 | RIBONUCLEASE J |
5a0t_B | 4e-61 | 139 | 769 | 19 | 483 | RIBONUCLEASE J |
5a0v_A | 4e-61 | 139 | 769 | 19 | 483 | RIBONUCLEASE J |
5a0v_B | 4e-61 | 139 | 769 | 19 | 483 | RIBONUCLEASE J |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462854944 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451689.1 | 0.0 | uncharacterized protein LOC8079424 isoform X2 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A3L6RMV1 | 0.0 | A0A3L6RMV1_PANMI; Ribonuclease J isoform X1 | ||||
STRING | Pavir.Ab01874.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4996 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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