PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462852436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Dof | ||||||||
Protein Properties | Length: 193aa MW: 19784.7 Da PI: 9.7112 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7.3e-40 | 60 | 121 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss 462852436 60 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 121 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-26 | 56 | 109 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.0E-34 | 62 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEEMLMAGNP NPNQNQNPPP AAPSAAGAQR GGAPAAPAAA APGAGAGAGA GTERRARPQK 60 EKALNCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS 120 SSLLFPFEDL KPAVSAAAGV GNTGGGGDQY EHNKDQGGDG RAGSGVTGGQ EAPGFWHNSM 180 IGNGNGNGGG GPW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462852436 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582410 | 1e-104 | KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147698.1 | 2e-47 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_020147699.1 | 1e-47 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Refseq | XP_020147700.1 | 1e-47 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Swissprot | B9F1L8 | 8e-43 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | F2EII1 | 4e-50 | F2EII1_HORVV; Predicted protein | ||||
STRING | MLOC_68844.2 | 1e-50 | (Hordeum vulgare) | ||||
STRING | Traes_2AL_189D6889B.1 | 9e-51 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-32 | Dof family protein |
Publications ? help Back to Top | |||
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