PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462852433
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 763aa    MW: 82022.5 Da    PI: 5.4707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462852433genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.93.2e-2296151156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe+lF+++++p+ ++r eL+k+lgL+ rqVk+WFqNrR+++k
  462852433  96 KKRYHRHTPQQIQELEALFKECPHPDDKQRGELSKRLGLDPRQVKFWFQNRRTQMK 151
                678899***********************************************999 PP
2START134.51.2e-4238650494206
                EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
      START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                m+aelq+lsplvp R+++f+R+++qlg+g w++vdvS+d  ++++++    +++ v++++lpSg+++++++ng++kvtwveh++++++++h l+r+l++s
  462852433 386 MKAELQVLSPLVPiREVTFLRFCKQLGQGAWAVVDVSIDglVRDQNSAttsTAGNVKCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVHHLYRPLLRS 485
                899***********************************85423333334679************************************************ PP

                HHHHHHHHHHHHTXXXXXX CS
      START 188 glaegaktwvatlqrqcek 206
                gla+ga++w+atlqrqce+
  462852433 486 GLAFGARRWLATLQRQCEC 504
                *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-2177153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-2481153IPR009057Homeodomain-like
PROSITE profilePS5007118.15593153IPR001356Homeobox domain
SMARTSM003891.9E-2194157IPR001356Homeobox domain
CDDcd000863.89E-2095153No hitNo description
PfamPF000461.0E-1996151IPR001356Homeobox domain
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
PROSITE profilePS5084830.019297507IPR002913START domain
SuperFamilySSF559614.16E-23299504No hitNo description
CDDcd088751.98E-89303503No hitNo description
SMARTSM002348.8E-23306504IPR002913START domain
PfamPF018522.9E-37386504IPR002913START domain
SuperFamilySSF559611.33E-21533757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MSFGSLFDGG AGGSGGGMQF PYSAGFSSSP ALSLGLDNNA GGMGGLMHPG GAGDGAMGRD  60
PDAENDSRSG SDHFDAMSGG GEDEDDAEPG NPRKRKKRYH RHTPQQIQEL EALFKECPHP  120
DDKQRGELSK RLGLDPRQVK FWFQNRRTQM KTQLERHENA LLKQENDKLR AENMTIRDAM  180
RSPIPAMLGE ASLEEQHLRI ENARLKDELN RVYALATKFL GKPISFLTGY QPQSLLSTMP  240
MPSSSLELAV GGLGGMGSMP HTTMPGTMSE FAGGVSSPLG TVITPARATG SAPPSMVGID  300
RTMLLDLAIA AMDELVKVAQ MDEPLWLPTV PGAPNKETFN FEEYVRSIIP CIGMKPVGFV  360
SEASRESGIV IIDDSVALVE TLMDEMKAEL QVLSPLVPIR EVTFLRFCKQ LGQGAWAVVD  420
VSIDGLVRDQ NSATTSTAGN VKCRRLPSGC VMQDTPNGYC KVTWVEHTEY DEASVHHLYR  480
PLLRSGLAFG ARRWLATLQR QCECLAILMS PGTVSANDSS VITQEGKRSM LKLARRMTEN  540
FCAGVSASSA REWSKLDGGA AGSIGEDVRV MARKSVNEPG EPPGVVLSAA TSVWVPVAPE  600
KLFNFLRNER LRAEWDILSN GGPMQAMTNI AKGQEQGNSV SLLRASAMSA NQSSMLILQE  660
TCTDASGSMV VYAPVDIPAM QLVMNGGDST YVALLPSGFA ILPDGPSIDS AGQKTGGSLL  720
TVAFQILVNS QPTAKLTMES VETVNNLISC TIKKIKNALQ CDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197PRKRKKR
29296RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462852433
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632490.0BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBankBT0644530.0BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968002.10.0homeobox-leucine zipper protein ROC5 isoform X2
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLK3XEN00.0K3XEN0_SETIT; Uncharacterized protein
STRINGSi000344m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]