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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 462852206 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family | bHLH | ||||||||
| Protein Properties | Length: 305aa MW: 33348.1 Da PI: 5.7861 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 28.7 | 2.4e-09 | 98 | 145 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq
462852206 98 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 145
8*************************9....677*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 1.93E-10 | 92 | 149 | No hit | No description |
| SuperFamily | SSF47459 | 1.44E-16 | 92 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 5.2E-16 | 94 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 15.301 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.6E-6 | 98 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 9.0E-10 | 100 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 305 aa Download sequence Send to blast |
MRDANAKKRK APAAAKGKGK EPPCQAGEQN ESDAKRCKTD GADKREESPV KPKAEQAGSD 60 ISVEDSGQKP GKGKNAKPVE PPKDYVHVRA RRGQATDSHS LAERVRRERI SQRMKVLQDL 120 VPGCNKVIGK ALMLDEIINY VQSLQRQVEF LSMKLATVNP VDFSNLPALL QKDMFQACGP 180 SASSVFSLES SNSGFPFSDQ GDVFQSFVPN GLENQCALNP LDLALSQATS AQYAFQDGTP 240 SSNLQQRNFW EEDLPSVFQI DNGQSQENGV SAQSFHGFPS DTFTDTSELS FDTGQVQAGH 300 MKMEF |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 462852206 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015695672.1 | 1e-168 | PREDICTED: transcription factor bHLH78-like, partial | ||||
| TrEMBL | A0A0A9IY98 | 1e-180 | A0A0A9IY98_ARUDO; Uncharacterized protein | ||||
| STRING | OB08G27870.1 | 1e-166 | (Oryza brachyantha) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP919 | 38 | 137 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G68920.3 | 2e-53 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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