PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462850300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 547aa MW: 60208.3 Da PI: 6.2549 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 438.3 | 5.4e-134 | 177 | 546 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+elL++cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla s++++ykal+++e + +e l+++++++e++P++kf+++ aN 462850300 177 LKELLITCARAVEENNNFAINLMIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKALKCKEPK---GAELLSYMHFLYEACPYFKFGYMSANG 273 5799*****************************************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp +RiTg++++ s + le +g+rL+++A+ ++vpfef++ va + +d+e+e+L + p 462850300 274 AIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPFVRITGIDDSFSAfaRGGGLELVGKRLSQIAAMCKVPFEFHA-VAISGNDIEVEHLGIIP 372 *************************************************77769999*************************.6889************* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEa+aVn+ l+lh+++de+vs++++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e+l+yy+a+f+s++ l+r+++eri++E+++l+reivn+v 462850300 373 GEAVAVNFTLELHHIPDETVSTANHRDRILRLVKSLSPKVLTLVEQESNTNTAPFVPRFAETLDYYTAIFESIDLALARDDKERINMEQHCLAREIVNLV 472 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+erhe ++kW++rl+++GF+p pls +++++k+ll+ ++ + y++ e++g+l+lgWk+rpLv+ SaW 462850300 473 ACEGEERVERHEVFGKWKARLMMSGFRPSPLSVLVNSTIKTLLQSYSPN-YKLLERDGALFLGWKNRPLVVSSAW 546 ***********************************************55.************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.427 | 151 | 528 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-131 | 177 | 546 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MADTPTSRMV HPFGNVPRQT PKQFLFSGNS QHLYNPYQSA GDSHVVPQHH YNMKSHSPDS 60 GSESHETHQQ YTLDSSAGSG CMRHDSPSGH SLTTGSGSPL SQEDSHSGST NGNGSPVSAS 120 CVTEDPNDLK QKLKDLEAAM LGTDLEAVNS LELSVANQLS LEPEEWVHMM SMPRGNLKEL 180 LITCARAVEE NNNFAINLMI PELRKMVSVS GEPLERLGAY MVEGLVARLA ASGNSIYKAL 240 KCKEPKGAEL LSYMHFLYEA CPYFKFGYMS ANGAIAEAVK GEDRIHIIDF HIAQGAQWIS 300 LLQALAARPG GPPFVRITGI DDSFSAFARG GGLELVGKRL SQIAAMCKVP FEFHAVAISG 360 NDIEVEHLGI IPGEAVAVNF TLELHHIPDE TVSTANHRDR ILRLVKSLSP KVLTLVEQES 420 NTNTAPFVPR FAETLDYYTA IFESIDLALA RDDKERINME QHCLAREIVN LVACEGEERV 480 ERHEVFGKWK ARLMMSGFRP SPLSVLVNST IKTLLQSYSP NYKLLERDGA LFLGWKNRPL 540 VVSSAWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-67 | 181 | 547 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462850300 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958142.1 | 0.0 | chitin-inducible gibberellin-responsive protein 2 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A1E5VF81 | 0.0 | A0A1E5VF81_9POAL; Chitin-inducible gibberellin-responsive protein 2 | ||||
STRING | Si029418m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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