PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462849803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 524aa MW: 59427.3 Da PI: 7.0458 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 57.4 | 3.1e-18 | 2 | 89 | 112 | 202 |
GRAS 112 vHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 v i+D++ +s++ QW+ Ll+ + +Rp+g+p++R T+v++ +++ l ++++ L+k Ae+l++pf+f+ v rle+l++++Lr+ ++ a+ 462849803 2 VRIVDLScsVSHPWQWLKLLHDFHQRPGGAPEVRFTVVHD----DSDYLAKMQKLLSKEAEALKIPFQFTC-VLGRLETLDFSNLRLPSDHAT 89 569999633789****************************....9**************************.799**********99887665 PP | |||||||
2 | GRAS | 298.3 | 1.9e-91 | 99 | 508 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +L+ecA +v++g++e++++ L +++ las + ++qRl + ++ La+r++ ++ al +ps+ e +s+ +a++ f ++ P++ +++t NqaI 462849803 99 VLYECAVHVTEGNFEKTDNSLRQIKGLASIVDGSLQRLSSTIAYSLARRILCPIQGFDGALiHPSDYFE--QSSIQTARENFANLNPYISTGFVTINQAI 196 699*************************************************88888877755555554..4555568888******************* PP GRAS 103 leavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rv 196 lea+e+e+ v iiD++ +s++ QW+ Ll+ + +Rp+g+p++R T+v++ ++e l ++++ L+k Ae+l++pf+f+ v rle+l+l++L ++ 462849803 197 LEALEEEKVVRIIDLScsVSHPWQWLKLLHDFHQRPGGAPEVRFTVVHD----DSEYLAKMQKLLSKEAEALKIPFQFTC-VIGRLETLDLSNLrntlQI 291 **************9633789****************************....9**************************.7999999999988443356 PP GRAS 197 kpgEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 k gEa+a++++l++hr+l s ++++ ++L++v+ l+P+++ v+eq+a+hn+ F +rf+e 462849803 292 KFGEAVAISCALEMHRMLvvddnvtcagiaqlqrmtniaqlkqmanslphyypqTPSPQTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVEV 391 66**************************************************98666777778889********************************** PP GRAS 261 leyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 l+yy+alfdsl ++ l++ + +er+ vEr++lg+ei+n++ eg +r erhe+l +W ++ GF+ vpls +a + + l ++ ++ + +++ g+ 462849803 392 LNYYAALFDSLhAMALASRQkaDERARVERMILGEEIKNILVYEGVRRHERHERLIQWATYMGGYGFNHVPLSFSAIRKCNEQLMSFGLKECQNKQDTGC 491 ***********666666555679*****************************************************************888********* PP GRAS 358 lvlgWkdrpLvsvSaWr 374 l+l+W + +++s+SaWr 462849803 492 LLLCWGSTQVYSISAWR 508 ****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.1E-15 | 2 | 89 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 39.487 | 70 | 488 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.6E-89 | 99 | 508 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
VVRIVDLSCS VSHPWQWLKL LHDFHQRPGG APEVRFTVVH DDSDYLAKMQ KLLSKEAEAL 60 KIPFQFTCVL GRLETLDFSN LRLPSDHATV DRLAQLGPVL YECAVHVTEG NFEKTDNSLR 120 QIKGLASIVD GSLQRLSSTI AYSLARRILC PIQGFDGALI HPSDYFEQSS IQTARENFAN 180 LNPYISTGFV TINQAILEAL EEEKVVRIID LSCSVSHPWQ WLKLLHDFHQ RPGGAPEVRF 240 TVVHDDSEYL AKMQKLLSKE AEALKIPFQF TCVIGRLETL DLSNLRNTLQ IKFGEAVAIS 300 CALEMHRMLV VDDNVTCAGI AQLQRMTNIA QLKQMANSLP HYYPQTPSPQ TPKLLASFLN 360 AVRALKPNIM LVMEQDANHN ALLFCDRFVE VLNYYAALFD SLHAMALASR QKADERARVE 420 RMILGEEIKN ILVYEGVRRH ERHERLIQWA TYMGGYGFNH VPLSFSAIRK CNEQLMSFGL 480 KECQNKQDTG CLLLCWGSTQ VYSISAWRPH NELSSGSREH MFSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-36 | 102 | 511 | 25 | 382 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462849803 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826866.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0A9C2J4 | 0.0 | A0A0A9C2J4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J24605.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 5e-81 | scarecrow-like 3 |