PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462849803
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GRAS
Protein Properties Length: 524aa    MW: 59427.3 Da    PI: 7.0458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462849803genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.43.1e-18289112202
       GRAS 112 vHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                v i+D++  +s++ QW+ Ll+ + +Rp+g+p++R T+v++    +++ l ++++ L+k Ae+l++pf+f+  v  rle+l++++Lr+ ++ a+
  462849803   2 VRIVDLScsVSHPWQWLKLLHDFHQRPGGAPEVRFTVVHD----DSDYLAKMQKLLSKEAEALKIPFQFTC-VLGRLETLDFSNLRLPSDHAT 89 
                569999633789****************************....9**************************.799**********99887665 PP

2GRAS298.31.9e-91995084374
       GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                +L+ecA +v++g++e++++ L +++ las  + ++qRl + ++  La+r++   ++   al +ps+  e  +s+  +a++ f ++ P++  +++t NqaI
  462849803  99 VLYECAVHVTEGNFEKTDNSLRQIKGLASIVDGSLQRLSSTIAYSLARRILCPIQGFDGALiHPSDYFE--QSSIQTARENFANLNPYISTGFVTINQAI 196
                699*************************************************88888877755555554..4555568888******************* PP

       GRAS 103 leavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rv 196
                lea+e+e+ v iiD++  +s++ QW+ Ll+ + +Rp+g+p++R T+v++    ++e l ++++ L+k Ae+l++pf+f+  v  rle+l+l++L    ++
  462849803 197 LEALEEEKVVRIIDLScsVSHPWQWLKLLHDFHQRPGGAPEVRFTVVHD----DSEYLAKMQKLLSKEAEALKIPFQFTC-VIGRLETLDLSNLrntlQI 291
                **************9633789****************************....9**************************.7999999999988443356 PP

       GRAS 197 kpgEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                k gEa+a++++l++hr+l                                      s ++++   ++L++v+ l+P+++ v+eq+a+hn+  F +rf+e 
  462849803 292 KFGEAVAISCALEMHRMLvvddnvtcagiaqlqrmtniaqlkqmanslphyypqTPSPQTPKLLASFLNAVRALKPNIMLVMEQDANHNALLFCDRFVEV 391
                66**************************************************98666777778889********************************** PP

       GRAS 261 leyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                l+yy+alfdsl ++ l++ +  +er+ vEr++lg+ei+n++  eg +r erhe+l +W   ++  GF+ vpls +a  + +  l  ++ ++ + +++ g+
  462849803 392 LNYYAALFDSLhAMALASRQkaDERARVERMILGEEIKNILVYEGVRRHERHERLIQWATYMGGYGFNHVPLSFSAIRKCNEQLMSFGLKECQNKQDTGC 491
                ***********666666555679*****************************************************************888********* PP

       GRAS 358 lvlgWkdrpLvsvSaWr 374
                l+l+W + +++s+SaWr
  462849803 492 LLLCWGSTQVYSISAWR 508
                ****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.1E-15289IPR005202Transcription factor GRAS
PROSITE profilePS5098539.48770488IPR005202Transcription factor GRAS
PfamPF035146.6E-8999508IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
VVRIVDLSCS VSHPWQWLKL LHDFHQRPGG APEVRFTVVH DDSDYLAKMQ KLLSKEAEAL  60
KIPFQFTCVL GRLETLDFSN LRLPSDHATV DRLAQLGPVL YECAVHVTEG NFEKTDNSLR  120
QIKGLASIVD GSLQRLSSTI AYSLARRILC PIQGFDGALI HPSDYFEQSS IQTARENFAN  180
LNPYISTGFV TINQAILEAL EEEKVVRIID LSCSVSHPWQ WLKLLHDFHQ RPGGAPEVRF  240
TVVHDDSEYL AKMQKLLSKE AEALKIPFQF TCVIGRLETL DLSNLRNTLQ IKFGEAVAIS  300
CALEMHRMLV VDDNVTCAGI AQLQRMTNIA QLKQMANSLP HYYPQTPSPQ TPKLLASFLN  360
AVRALKPNIM LVMEQDANHN ALLFCDRFVE VLNYYAALFD SLHAMALASR QKADERARVE  420
RMILGEEIKN ILVYEGVRRH ERHERLIQWA TYMGGYGFNH VPLSFSAIRK CNEQLMSFGL  480
KECQNKQDTG CLLLCWGSTQ VYSISAWRPH NELSSGSREH MFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3610251125382Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462849803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826866.10.0scarecrow-like protein 3
TrEMBLA0A0A9C2J40.0A0A0A9C2J4_ARUDO; Uncharacterized protein
STRINGPavir.J24605.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-81scarecrow-like 3