PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462847593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 61aa MW: 6935.93 Da PI: 9.9563 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 57.2 | 3.6e-18 | 1 | 56 | 319 | 374 |
GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +e aGF+ vpls++a qa++ + + dg++v ee+gs++l+W+dr+++svSaWr 462847593 1 MEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 56 788****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.2E-15 | 1 | 56 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MEGAGFGRVP LSYYALLQAR RAAQGLGCDG FKVREEKGSF FLCWQDRAIF SVSAWRGRRF 60 D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462847593 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364826 | 1e-63 | AK364826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028K08. | |||
GenBank | AK365688 | 1e-63 | AK365688.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036F09. | |||
GenBank | AK372202 | 1e-63 | AK372202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148A03. | |||
GenBank | AK373958 | 1e-63 | AK373958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049D13. | |||
GenBank | BT070027 | 1e-63 | BT070027.1 Zea mays full-length cDNA clone ZM_BFb0369H02 mRNA, complete cds. | |||
GenBank | EU950610 | 1e-63 | EU950610.1 Zea mays clone 502636 mRNA sequence. | |||
GenBank | EU956570 | 1e-63 | EU956570.1 Zea mays clone 1566913 GRAS family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971220.1 | 1e-35 | scarecrow-like protein 3 | ||||
Refseq | XP_022682001.1 | 1e-35 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 7e-22 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A287MKE6 | 3e-35 | A0A287MKE6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A368RFP6 | 2e-34 | A0A368RFP6_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A453GM99 | 4e-35 | A0A453GM99_AEGTS; Uncharacterized protein | ||||
TrEMBL | K3XHR4 | 1e-34 | K3XHR4_SETIT; Uncharacterized protein | ||||
STRING | Si001436m | 2e-35 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-13 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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