PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462845541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 17520.2 Da PI: 10.9408 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00057 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H 462845541 46 FQCRTCGRRFATFQALGGHRTSH 68 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 97 | 119 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++ L H+ +H 462845541 97 HRCNTCGAVFPTGQALGGHMHRH 119 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 36 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.83E-5 | 45 | 72 | No hit | No description |
SMART | SM00355 | 0.19 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-9 | 46 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.699 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.61E-5 | 95 | 121 | No hit | No description |
Pfam | PF13912 | 5.5E-12 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MSTTASRPTA LEPANLLHLL SLSLSPASKV IVKQSKKRVH LMDGEFQCRT CGRRFATFQA 60 LGGHRTSHKR PRVRADGLDL LLGARPGKGA AAAKDVHRCN TCGAVFPTGQ ALGGHMHRHR 120 AAIFHVATTA LKTMPTMTTS GLSEDSDDAE ELLPTRTLFH FI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462845541 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 2e-52 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK062491 | 2e-52 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. | |||
GenBank | AK105226 | 2e-52 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. | |||
GenBank | AP014967 | 2e-52 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY305866 | 2e-52 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. | |||
GenBank | CP012619 | 2e-52 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | CT833322 | 2e-52 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980041.1 | 5e-55 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A368SBJ9 | 1e-53 | A0A368SBJ9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ha00194.1.p | 1e-54 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 5e-22 | C2H2 family protein |