PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

446039

Common Name

SELMODRAFT_446039

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 389aa MW: 43198.7 Da PI: 8.5774

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
446039	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.6	1.1e-15	81	167	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt e l+Li+a+r+ e+ + k ++ +W+ v+++m+++ + r+ qC++kwen+ k+yk++++++ ++ yf++++ 446039 81 WTVPEMLTLIDAKRKEREWCQMYKrgvklPAAERWRIVAAHMEAKDMGRTGSQCQDKWENMMKDYKAVRDWQCMIG-GAA--KNYFKDMT 167 *************9999996444455589**************************************98763.222..36788876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.386	73	142	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-6	74	143	IPR009057	Homeodomain-like
SMART	SM00717	0.0044	77	144	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-15	79	166	No hit	No description
SuperFamily	SSF46689	2.94E-5	104	150	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MDDNGETTSD PTQAGEATTT TTTTTTTTAA GNTLSPAPPP TAAQAVQAAV AAAAPAAPRS 60 SSLHSAGGRN PIKKRSRSAP WTVPEMLTLI DAKRKEREWC QMYKRGVKLP AAERWRIVAA 120 HMEAKDMGRT GSQCQDKWEN MMKDYKAVRD WQCMIGGAAK NYFKDMTNKE RKDANLPPQM 180 DEIVFYSLHA IQSEKEEKKE IDRMQKNGYM KLMPPSPGIS PSEGICHPPP PETNLCHQQQ 240 HHQQQQSQLV LQQQQQRENT QPPLVVPLVQ HKDKEGSDEA DVNSIDSDTS GRKRARRLVM 300 DHHQQQQQQQ QPASVFAENP VVFDNFVHAS SKDGSKEFID CFMKVLEKSD RSPDTTTTET 360 KKKSKDTALL TRALVALADA VKMVAQKL*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MDDNGETTSD PTQAGEATTT TTTTTTTTAA GNTLSPAPPP TAAQAVQAAV AAAAPAAPRS  60
SSLHSAGGRN PIKKRSRSAP WTVPEMLTLI DAKRKEREWC QMYKRGVKLP AAERWRIVAA  120
HMEAKDMGRT GSQCQDKWEN MMKDYKAVRD WQCMIGGAAK NYFKDMTNKE RKDANLPPQM  180
DEIVFYSLHA IQSEKEEKKE IDRMQKNGYM KLMPPSPGIS PSEGICHPPP PETNLCHQQQ  240
HHQQQQSQLV LQQQQQRENT QPPLVVPLVQ HKDKEGSDEA DVNSIDSDTS GRKRARRLVM  300
DHHQQQQQQQ QPASVFAENP VVFDNFVHAS SKDGSKEFID CFMKVLEKSD RSPDTTTTET  360
KKKSKDTALL TRALVALADA VKMVAQKL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	297	GRKRARRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024545720.1	0.0	uncharacterized protein LOC9645106
TrEMBL	D8SN76	0.0	D8SN76_SELML; Uncharacterized protein
STRING	EFJ14021	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP15280	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-12	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	446039
Entrez Gene	9645106

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]