PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

341138

Common Name

ARALYDRAFT_341138

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 478aa MW: 55228.5 Da PI: 8.0895

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
341138	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.9e-30	87	173	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea 341138 87 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 173 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.5E-4	84	147	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	86	145	IPR017877	Myb-like domain
CDD	cd12203	2.74E-18	87	152	No hit	No description
Pfam	PF13837	8.9E-20	87	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MEDHHHQNHP QYGIAQPSPH PSDPFGFNLV SAPDQHHRLH FTDHEISFLP RGIQGLTVAG 60 NNSNTNVANT SGVGGFSGFT DGGGTGRWPR QETLMLLEVR SRLDHKFKEA NQKGPLWDEV 120 SRIMSEEHGY TRSGKKCREK FENLYKYYKK TKEGKAGRRQ DGKNYRFFRQ LEAIYGEAKD 180 PVSCYNNSQF IMTNALHSFH ASNLHNSVPH HQKPLMTNTQ SQSLSISNNF NSSSELDLTS 240 SSEGNESTRR EEMNWKERIK DFIGVHMERL IEKQDFWLEK LMKTVEDKEN QRMMREEKWK 300 RIEVARIDKE RLFWTKERER MEARDVAVIE ALQYLTGKAL IRPDSSSPIE RINGSGSDKM 360 MVENEYADEE NKGKVEKKQM NKKRKEKWSN HGVNHPRIKE NMMIYNNQET RINDCSLDDE 420 QGHHQEGYSP SNSKEGNPSR SIVMAASTKC FPLPEGDGDQ NLWDGYGLKL RKENNHQ*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MEDHHHQNHP QYGIAQPSPH PSDPFGFNLV SAPDQHHRLH FTDHEISFLP RGIQGLTVAG  60
NNSNTNVANT SGVGGFSGFT DGGGTGRWPR QETLMLLEVR SRLDHKFKEA NQKGPLWDEV  120
SRIMSEEHGY TRSGKKCREK FENLYKYYKK TKEGKAGRRQ DGKNYRFFRQ LEAIYGEAKD  180
PVSCYNNSQF IMTNALHSFH ASNLHNSVPH HQKPLMTNTQ SQSLSISNNF NSSSELDLTS  240
SSEGNESTRR EEMNWKERIK DFIGVHMERL IEKQDFWLEK LMKTVEDKEN QRMMREEKWK  300
RIEVARIDKE RLFWTKERER MEARDVAVIE ALQYLTGKAL IRPDSSSPIE RINGSGSDKM  360
MVENEYADEE NKGKVEKKQM NKKRKEKWSN HGVNHPRIKE NMMIYNNQET RINDCSLDDE  420
QGHHQEGYSP SNSKEGNPSR SIVMAASTKC FPLPEGDGDQ NLWDGYGLKL RKENNHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	341138

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630487	0.0	AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882649.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-149	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	D7L8F3	0.0	D7L8F3_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_3000901	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	341138
Entrez Gene	9320836

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]