PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313839
Common NameARALYDRAFT_313839
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 364aa    MW: 42036 Da    PI: 5.9761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.91.2e-50161441128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
             +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+e+d++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk ++s   + +
  313839  16 VPPGFRFHPTEEELLHYYLRKKVNSQKIDL-DVIREIDLNKLEPWDIQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICS-CIRRI 116
             69****************************.9***************963433332456**********************************9999.9999* PP

     NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
             gl+ktLvfykgrap+g+k+dW+mheyrl
  313839 117 GLRKTLVFYKGRAPHGQKSDWIMHEYRL 144
             **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5512177IPR003441NAC domain
PROSITE profilePS5100554.93916177IPR003441NAC domain
PfamPF023659.0E-2717144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010047Biological Processfruit dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MADNKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE IDLNKLEPWD  60
IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIC SCIRRIGLRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDDTPMS NGYSDVVTED PMNYNEEGWV VCRVFRKKNY  180
QKIDDCPKIT LSSSIDDTEE EKRPTCHNTQ NSTVLDHVLL YMDRTGSNIC MPERQTTTKT  240
QHQDDVLFTQ LPSLETPKSE SPVDNSFMTS NQLGSSPVQE KIITGRPVCS NWASLDRLVA  300
WQLNNGRHTC DRKSFDEEEE IGDTMMQRWD LHWNNDDNVD LWSSFTESSS SPSSLDPLLH  360
LSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-471317914167NO APICAL MERISTEM PROTEIN
1ut4_B1e-471317914167NO APICAL MERISTEM PROTEIN
1ut7_A1e-471317914167NO APICAL MERISTEM PROTEIN
1ut7_B1e-471317914167NO APICAL MERISTEM PROTEIN
3swm_A1e-471317917170NAC domain-containing protein 19
3swm_B1e-471317917170NAC domain-containing protein 19
3swm_C1e-471317917170NAC domain-containing protein 19
3swm_D1e-471317917170NAC domain-containing protein 19
3swp_A1e-471317917170NAC domain-containing protein 19
3swp_B1e-471317917170NAC domain-containing protein 19
3swp_C1e-471317917170NAC domain-containing protein 19
3swp_D1e-471317917170NAC domain-containing protein 19
4dul_A1e-471317914167NAC domain-containing protein 19
4dul_B1e-471317914167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00016PBMTransfer from AT1G32770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap313839
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1018920.0EF101892.1 Arabidopsis thaliana SND1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893740.10.0NAC domain-containing protein 12
SwissprotQ9LPI70.0NAC12_ARATH; NAC domain-containing protein 12
TrEMBLD7KIC60.0D7KIC6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10026190.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32770.10.0NAC domain containing protein 12
Publications ? help Back to Top
  1. Zhao Q, et al.
    Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis.
    Phytochemistry, 2015. 112: p. 170-8
    [PMID:25107662]
  2. Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E
    Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana.
    J. Plant Physiol., 2015. 175: p. 86-94
    [PMID:25506770]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Huang J,Chen F,Wu S,Li J,Xu W
    Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis.
    Sci China Life Sci, 2016. 59(2): p. 194-205
    [PMID:26803299]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]