PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | AP2 | ||||||||
Protein Properties | Length: 346aa MW: 37132.3 Da PI: 10.3091 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.3 | 1.1e-09 | 141 | 186 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 s y+GV+ +++g++ A+I + rk+ +lg f ++eeAa+a+++a+ 30700 141 SLYRGVSLLRQTGKYHAQINVQ-----RKQLHLGFFFSEEEAARAYDRAAI 186 57******************93.....5*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-11 | 141 | 187 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-4 | 142 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.957 | 142 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-7 | 142 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-10 | 142 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGAYTYDSAT HGPPIGVPRT IGKARTTARG DDAEGDSGSG RSSDAPLSVN VFGGGTQFAR 60 SSPSESEVGT PGRGMEAPRN GTATARPRGR ASSGSKSPTD LSETDSEQSN TGKGDGANKL 120 VHKDLVTNLK AQARRHDSRT SLYRGVSLLR QTGKYHAQIN VQRKQLHLGF FFSEEEAARA 180 YDRAAIFKAS VEGGTICTNM DINDYKDEIP TLQAMTQPEL LQMLHEMKLK SNESSAPNSP 240 RKGIKPRTST NSKQMARENR LDRSNSGSIE HVIIKANSQE PPTSPRFDAL NSAVGVVERE 300 QQGTLSVVNV AASVTVQHTC PGVIDLHISK RRRTRIQPRQ APAAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000583 | 0.0 | CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001416711.1 | 0.0 | predicted protein | ||||
TrEMBL | A4RUQ2 | 0.0 | A4RUQ2_OSTLU; Uncharacterized protein | ||||
STRING | ABO95004 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP8019 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67180.1 | 4e-06 | target of early activation tagged (EAT) 3 |
Link Out ? help Back to Top | |
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Phytozome | 30700 |