PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30189.m001642
Common NameRCOM_1667360
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 282aa    MW: 31930.8 Da    PI: 9.0995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30189.m001642genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11427226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   + e Cr+f+r G C+yG+rCkF H+
  30189.m001642  4 RKEVCRNFQR-GSCQYGERCKFLHV 27
                   6799******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.248229IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-7228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-8327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6330IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAFRKEVCRN FQRGSCQYGE RCKFLHVNNQ QQQSNNNSFG FGSQQKQQNQ SSSPFGFGTQ  60
SKSSTKPFEN KWTRFSPISN AAATPSSRQP DNQPQPANHK CTDPDSCKRQ IAEDFQNEKP  120
LWKLTCYGHS KNGPCDIGGD VSYEELRALA YDEAKHGLTL QSIVERERNL LSSKLIEFEN  180
LLRNPYAAPP KSAFSQSPFP GVTPNAILPS GQNNPPPSVS SFSQLGASLN MATRTRHDSC  240
IQLFLVHFFY LVSVYYFSPF QDWLLAFNII KQCFWATKLL KF
Cis-element ? help Back to Top
SourceLink
PlantRegMap30189.m001642
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571903.11e-173zinc finger CCCH domain-containing protein 16 isoform X1
SwissprotQ9FWS31e-75C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLB9RL600.0B9RL60_RICCO; Nucleic acid binding protein, putative
STRINGXP_002514479.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.17e-71C3H family protein