PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30174.m008818 | ||||||||
Common Name | RCOM_1610150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 272aa MW: 30252.2 Da PI: 5.2749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C ksFs+ L H+r+H 30174.m008818 4 HKCKLCLKSFSNGRALGGHMRSH 26 79********************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H 30174.m008818 122 YRCETCKKVFKSYQALGGHRASH 144 9************9999998887 PP | |||||||
3 | zf-C2H2 | 13.2 | 0.00027 | 179 | 201 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H 30174.m008818 179 HECPYCFRVFSSGQALGGHKRSH 201 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.5E-7 | 3 | 26 | No hit | No description |
PROSITE profile | PS50157 | 10.699 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-8 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.5E-7 | 117 | 144 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-11 | 122 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.37E-5 | 176 | 202 | No hit | No description |
PROSITE profile | PS50157 | 9.286 | 179 | 201 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 179 | 201 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.5E-11 | 179 | 201 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 181 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEKHKCKLCL KSFSNGRALG GHMRSHMLNL PVLQKQQQHP PEEDDDDDRP PTIQLGENTE 60 SASSSSSSSS SEEEDKPQHH QEQEQEQDDQ EEEEEEEAER SIEETDESDE FKSCKTRIKG 120 KYRCETCKKV FKSYQALGGH RASHKKLKLH SPIQERELET ENNNNNAATS GSVSVKKIHE 180 CPYCFRVFSS GQALGGHKRS HVVTGIATAA AATTTTRAIA TATPARSSIA TKVEDNLNLI 240 DLNLPAPIDE DDLSQVELSA VSDAEFVNHI KR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30174.m008818 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015903.1 | 3e-97 | zinc finger protein ZAT9 | ||||
TrEMBL | B9RD62 | 0.0 | B9RD62_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002511651.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-30 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 30174.m008818 |