PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013859
Common NameLOC8278853, RCOM_1590070
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 362aa    MW: 40499.6 Da    PI: 7.9302
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013859genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35251172103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  30170.m013859  25 FLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  30170.m013859 112 HRRKTA 117
                    ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.5E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.4E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAFMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAINHHHHHP HSPLGVNGPS FFPFSSRVSI SPSESDEQPN NNNNWCDSPP LTSPRGGVPN  180
ASVINGGGGY NSSVTALSED NERLRRSNNM LMSELAHMRK LYNDIIYFVQ NHVKPVTPSN  240
SYPSSLLLCA PTSTATPFTS NGSLIQKPLN QLLGYYNPPS TNSKLVPQVQ VLNSPTSTSQ  300
SSLTFLDEGC KNTKLFGVPL QSKKRLHSEY NASHTGNMET SKARLMLEKD DLGLNLMPPS  360
TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-212111717123Heat shock factor protein 1
5d5u_B3e-212111626131Heat shock factor protein 1
5d5v_B3e-212111626131Heat shock factor protein 1
5d5v_D3e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013859
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510200.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-121HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9R7A70.0B9R7A7_RICCO; DNA binding protein, putative
STRINGXP_002510200.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-120heat shock transcription factor B4