PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30147.m014329 | ||||||||
Common Name | RCOM_1501800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25864 Da PI: 5.7746 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.5 | 1.2e-16 | 111 | 161 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ +Aaka++ a+ +++g 30147.m014329 111 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDRDVDAAKAYDCAAFRMRG 161 7********.**********9...6566**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.3E-31 | 110 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 111 | 170 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.723 | 111 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 111 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-33 | 111 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-27 | 111 | 169 | No hit | No description |
PRINTS | PR00367 | 5.3E-13 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-13 | 151 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MATSQESSVL ELISQYLLGD FPSADIFFCN LDSTLAHPNL RPVKLESDNC PASSPEPKSP 60 VSDLIQYAHD AKPEVVEPTP PQPLGLASRP INRQSPPPDS NARDDEEEKR HYRGVRRRPW 120 GKFAAEIRDP NRKGSRVWLG TFDRDVDAAK AYDCAAFRMR GRKAILNFPL EAGLADPPKN 180 TGRKRRRVKR ADVEEMPESG EESPEIWSPG EEGVSYGDEL CHLSTKPALL TC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-27 | 110 | 170 | 4 | 64 | ATERF1 |
3gcc_A | 6e-27 | 110 | 170 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 186 | RKRRR |
2 | 182 | 189 | RKRRRVKR |
3 | 183 | 187 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30147.m014329 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025014729.1 | 1e-171 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | B9R9Y6 | 1e-169 | B9R9Y6_RICCO; DNA binding protein, putative | ||||
STRING | XP_002511011.1 | 1e-170 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 30147.m014329 |