PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30147.m014143

Common Name

RCOM_1498350

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 1021aa MW: 113905 Da PI: 7.4385

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30147.m014143	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.3	2.2e-09	238	299	20	82
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +l rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ +++ +yf 30147.m014143 238 QLTRGKTRADKDREVAEFLQRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGERDQV-GKSYF 299 456899999999**************************************9955444.44555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.93E-15	871	1004	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.5E-8	872	1011	No hit	No description
CDD	cd00180	1.05E-10	878	1004	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence Send to blast
MGDNKGDTSK KQTQQSQQSQ QQQQQQLSSS PSPKDPLEDS PETTRSQHHH QQPQSAVVTG 60 PPFISTPLYV PIGATSSPFD QQFEAVTPKR PRYATAQWKI LPSSSQQQTA QTTIVTSESS 120 PSGPSPTTIP TSTTNPQTQL LHHAPASSSD TASSPPHSPI PSLSAASGQE TSKPEAQQLH 180 QFRKGKYVSP VWKPNEMLWL ARAWRVQYQG GFDGSGSSTR PEHQDQTGQI TGGDSTFQLT 240 RGKTRADKDR EVAEFLQRHG VNRDAKTAGT KWDNMLGEFR KVYEWERGGE RDQVGKSYFR 300 LSPYERKLHR LPASFDEEVF EELSQFMGSR MRASQIRGPP GVGSGDDNSR ITALAVARAL 360 PPPPPFKEDD FSLPAARSKP LVMTSGGEPY FHSNRGSLLG FEASIDVAGG GGGAAAASSS 420 SKEIRRIGKV RMTWEESVSL WAEEGEHHRG RVRLQGSCFL NADELAFFDD SMVACTIEAF 480 EDGPLKGFSV DRFVSGQQVK VFGRRKASAS VAAPSGTNNI ICIFQSSNLG IHISQLFLFI 540 PAIPPWEFQD PTEYYVGCLR VPPTALPSLF ELSWYLQEPP PEELRFPLRK DVYRDLPQGK 600 EYFFTTSSEL LDCRGIAFDI LSSIIRTNPS ISAANASSRE SFIGLWDDCI NRVVSKFCSV 660 EVVIVRKPSS SLDDNTLQYQ WPNVTGFVRN FCLWRGEETD RLKEGQVDPS SSIVEKLLWT 720 YMDIPYILGY YAVGYLVTFC ALCRSQDRII RTDLYTLDLS SPSERLKALV PCYRIAGLLP 780 LLAERCFNNI NNGGTFKQLT FSDFERIDMG NGNIIEMTPN TVTRFFPNKR KWAAVKEIYD 840 FLDQRIPHAE SIFRSLEKDL SLVFKPRGVK FKPTNCDQLV EALKYVTKAL VALHDLSFMH 900 RDLSWDKVMR RSDRENEWFV SGFEEAVGAP QIYPHGVVEA RGRHAPEMGR GLHGVKVDVW 960 GVGHLVKSCG LGSNVVPKML RELQNRCLDQ NPEQRPTAAD CYHHLLQVQS SLQSSSSGGP 1020 Y

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence Send to blast

MGDNKGDTSK KQTQQSQQSQ QQQQQQLSSS PSPKDPLEDS PETTRSQHHH QQPQSAVVTG  60
PPFISTPLYV PIGATSSPFD QQFEAVTPKR PRYATAQWKI LPSSSQQQTA QTTIVTSESS  120
PSGPSPTTIP TSTTNPQTQL LHHAPASSSD TASSPPHSPI PSLSAASGQE TSKPEAQQLH  180
QFRKGKYVSP VWKPNEMLWL ARAWRVQYQG GFDGSGSSTR PEHQDQTGQI TGGDSTFQLT  240
RGKTRADKDR EVAEFLQRHG VNRDAKTAGT KWDNMLGEFR KVYEWERGGE RDQVGKSYFR  300
LSPYERKLHR LPASFDEEVF EELSQFMGSR MRASQIRGPP GVGSGDDNSR ITALAVARAL  360
PPPPPFKEDD FSLPAARSKP LVMTSGGEPY FHSNRGSLLG FEASIDVAGG GGGAAAASSS  420
SKEIRRIGKV RMTWEESVSL WAEEGEHHRG RVRLQGSCFL NADELAFFDD SMVACTIEAF  480
EDGPLKGFSV DRFVSGQQVK VFGRRKASAS VAAPSGTNNI ICIFQSSNLG IHISQLFLFI  540
PAIPPWEFQD PTEYYVGCLR VPPTALPSLF ELSWYLQEPP PEELRFPLRK DVYRDLPQGK  600
EYFFTTSSEL LDCRGIAFDI LSSIIRTNPS ISAANASSRE SFIGLWDDCI NRVVSKFCSV  660
EVVIVRKPSS SLDDNTLQYQ WPNVTGFVRN FCLWRGEETD RLKEGQVDPS SSIVEKLLWT  720
YMDIPYILGY YAVGYLVTFC ALCRSQDRII RTDLYTLDLS SPSERLKALV PCYRIAGLLP  780
LLAERCFNNI NNGGTFKQLT FSDFERIDMG NGNIIEMTPN TVTRFFPNKR KWAAVKEIYD  840
FLDQRIPHAE SIFRSLEKDL SLVFKPRGVK FKPTNCDQLV EALKYVTKAL VALHDLSFMH  900
RDLSWDKVMR RSDRENEWFV SGFEEAVGAP QIYPHGVVEA RGRHAPEMGR GLHGVKVDVW  960
GVGHLVKSCG LGSNVVPKML RELQNRCLDQ NPEQRPTAAD CYHHLLQVQS SLQSSSSGGP  1020
Y

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30147.m014143

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014768.1	0.0	uncharacterized protein LOC8258332
TrEMBL	B9R9K1	0.0	B9R9K1_RICCO; Uncharacterized protein
STRING	XP_002510876.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	30147.m014143