PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013923
Common NameLOC8288980, RCOM_1510310
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 328aa    MW: 36637.1 Da    PI: 4.7737
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013923genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-092713052155
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  30147.m013923 271 KWPYPTEADKVALADATGLDQKQINNWFINQRKRH 305
                    579*****************************885 PP
2ELK39.31.4e-13225246122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK+ Ll+KYsgy+++LkqEFs
  30147.m013923 225 ELKDKLLQKYSGYISTLKQEFS 246
                    9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-2285129IPR005540KNOX1
PfamPF037904.4E-2386128IPR005540KNOX1
SMARTSM012569.5E-27136187IPR005541KNOX2
PfamPF037912.4E-25140186IPR005541KNOX2
SMARTSM011881.2E-7225246IPR005539ELK domain
PfamPF037894.2E-11225246IPR005539ELK domain
PROSITE profilePS5121311.121225245IPR005539ELK domain
PROSITE profilePS5007112.503245308IPR001356Homeobox domain
SuperFamilySSF466897.27E-20246321IPR009057Homeodomain-like
SMARTSM003891.3E-13247312IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27250309IPR009057Homeodomain-like
CDDcd000862.13E-13257309No hitNo description
PfamPF059206.4E-17265304IPR008422Homeobox KN domain
PROSITE patternPS000270283306IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDELYGLHST CSDHYSMQQV VPENLVPSAP VDYHAFSSPG VSFPLLGSDH LFPGSSAVSD  60
AASMVAEMQR GVSGGGGGSE EEVSSAIRAK IAAHPLYPKL LQAYIDCQKV GAPPEMAYML  120
DEIRQESDLS KRPSTITSCL GADPELDEFM ETYCDILVKY KSDLSRPFNE ATTFLNDIEA  180
QLNTLCNTTT SRTHVSDEAV GSSDEDISGG ELEAQDSVRA NEERELKDKL LQKYSGYIST  240
LKQEFSKKKK KGKLPKEARQ ILLNWWNIHY KWPYPTEADK VALADATGLD QKQINNWFIN  300
QRKRHWKPSE NMQFAVVDSI YGPFFMND
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013923
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511373.10.0homeobox protein knotted-1-like 6 isoform X2
SwissprotQ84JS61e-124KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLB9RAZ80.0B9RAZ8_RICCO; Homeobox protein knotted-1, putative
STRINGXP_002511373.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-115KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]