PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30143.m001177

Common Name

LOC8287461, RCOM_1480880

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 272aa MW: 30556.7 Da PI: 6.6689

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30143.m001177	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H 30143.m001177 55 YSCSFCKREFRSAQALGGHMNVH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.03E-6	52	81	No hit	No description
PROSITE profile	PS50157	11.24	55	82	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.6E-6	55	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.006	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0048441	Biological Process	petal development
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEQPQRWMLM KRRQFLKSDN FQVWKNSVND SWEERAFAED ASGHLGGCIW PPRSYSCSFC 60 KREFRSAQAL GGHMNVHRRD RARLKQSLSS SSTPHQNNSD TFQYQNHSQP TLEGFNSHFP 120 SEFCTLDHEH GPNSSSSVIA STLTSSSRVS ALSTQENLSD HTFVSSIIQE KLNRTEVVKN 180 PREEDSTGLC NDNFVETDLF VGFNSVLSRN PSTGPYGDIS CKRPKTAVSA LSLIKPCSSD 240 RYSIHSEATE ANSSSMEDID LELRLGEPPK VN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-13	50	77	2	29	superman protein
2l1o_A	2e-13	50	77	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30143.m001177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002524213.1	0.0	probable transcriptional regulator RABBIT EARS
TrEMBL	B9SDZ4	0.0	B9SDZ4_RICCO; Transcriptional regulator SUPERMAN, putative
STRING	XP_002524213.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-28	C2H2 family protein

Link Out ? help Back to Top
Phytozome	30143.m001177
Entrez Gene	8287461