PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30143.m001171 | ||||||||
Common Name | LOC8274859, RCOM_1480320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 24370.3 Da PI: 4.2896 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.9 | 9.8e-40 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v++il+lqqq+++l++e++ 30143.m001171 7 SCGACKFLRRKCTSECVFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPVYGCVAHILALQQQIASLQEEID 102 6************************9789******************************************************************9 PP DUF260 96 llkee 100 l+++ 30143.m001171 103 ILGHQ 107 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.498 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-37 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MTGPGSSCGA CKFLRRKCTS ECVFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQN 60 RSDAAITISY EALARMRDPV YGCVAHILAL QQQIASLQEE IDILGHQMTN LAVGIASCEN 120 PQATLNPRCE MQFSSLQDAM IPEYYQNPQD TQVNNSGYTT GNETLDSQMN VELPPLYEWE 180 DQDPFCDFHP NCLDRLLEGV DQEIFPYWSW LDSANNAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 114 | 7 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30143.m001171 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524207.1 | 1e-165 | LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 2e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9SDY8 | 1e-164 | B9SDY8_RICCO; LOB domain-containing protein, putative | ||||
STRING | XP_002524207.1 | 1e-164 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-49 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | 30143.m001171 |
Entrez Gene | 8274859 |
Publications ? help Back to Top | |||
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