PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30128.m008988 | ||||||||
Common Name | RCOM_1436840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 758aa MW: 80868.2 Da PI: 6.2384 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.6 | 3.5e-16 | 469 | 515 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq 30128.m008988 469 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 515 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.77E-17 | 461 | 519 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-20 | 462 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-20 | 462 | 525 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 465 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 469 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 471 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MPLSELICRL SKGKFDSSSQ EKNTTCSTDL SAGPENDFLE LVWENGQIQS SRARKISNGV 60 QSQTSKFRDK DISIGIGNGN NTKMGRFGAM DFGLDEVPMS VPSVEMGLNQ EDDMVPWLND 120 PIDDSLQQDY CHEFLAELSG VTVNEHAQNS FASSDKKCNG NQSVRDSHTA SVHNGLSLEQ 180 GHMPRVSSGR DGDATRSRTT ASQLYSSSVQ QCQASFPHFR SRISANNAES TNNSTHVASS 240 GDPIRGSPSG GGFPSIKAQK QVPVLATTNS SLMNFSHFSR PVALAKANFE NIGTRAGSGI 300 SSIERIGSQD KGSIASSSNP AESMLNETFS GLKKETSSRC RPVMVSSKVD DKPLDHRPAE 360 EPLLAKQPEA MENDCKNDKN HCQFAASATK GLADGEKTAE PIVASSSVCS GNSMERVSDE 420 PMQNLKRKHR ETEESEGPSE DVEEESVGGK KAAPARGGTG SKRSRAAEVH NLSERRRRDR 480 INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI MSMGAGLYMP SMMLPPGVPH 540 MHVAHMSQFS PMGVGMGFGM GMPDMIGGSS GCSMIQVPPM HGAHFPSPPM SGPSALHGMG 600 GSNLPMFGLS SQGHPMPYLC PPVMPMSGGP LLRTTLGLNA GGVAGPTDNL DSAPGSSSKD 660 SIRNVNSHSI QNGGANSSMN QTSTQCQVTN ERFEQPALVQ SSAQASEVDS GALKSADEND 720 NAPSEANGKH ALATIALLII IIKRGMGMGW TLNEVDSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 473 | 478 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30128.m008988 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015570501.1 | 0.0 | transcription factor PIF3 isoform X1 | ||||
Refseq | XP_015570502.1 | 0.0 | transcription factor PIF3 isoform X2 | ||||
TrEMBL | B9RFR8 | 0.0 | B9RFR8_RICCO; Uncharacterized protein | ||||
STRING | XP_002512587.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-75 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 30128.m008988 |