PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30128.m008552 | ||||||||
Common Name | LOC8285688, RCOM_1438230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | Trihelix | ||||||||
Protein Properties | Length: 347aa MW: 37918.2 Da PI: 5.5942 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.5 | 3.7e-28 | 44 | 138 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li++++ e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e+ ++e++s +++ ++l+ 30128.m008552 44 RWTRQEILVLIQGKKVAENRVRRGRtagmafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWENHIREETESFWVMRNDLR 138 8**********************97778888888**********************************************9999999*9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.4 | 44 | 110 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.1E-12 | 44 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-5 | 44 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MALQQQFNLT SNTVDGDTTN GVDNTRPASI DGADDGSKTP RLPRWTRQEI LVLIQGKKVA 60 ENRVRRGRTA GMAFGSGQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDYKKIKEWE 120 NHIREETESF WVMRNDLRRE RKLPGFFDRE VFDILDGAGG VSAAPATPGL ALALAPATED 180 SEAVFDSGRT AAAEDGLFSD FEQEDAGGSP EKEAVKEAPP IKAAATGGIA APVPISEKQY 240 QPAVRTDQSQ GATNEKQPPS NPEMGSGLHE SRKRKRFGTT DGDEETTTLQ NQLIGVLERN 300 GEMLTAQLEA QNTNFQLDRE QRKDQANSLV AVLNKLADAL GKIADKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30128.m008552 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002512665.1 | 0.0 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 1e-126 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | B9RFZ6 | 0.0 | B9RFZ6_RICCO; Uncharacterized protein | ||||
STRING | XP_002512665.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-123 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | 30128.m008552 |
Entrez Gene | 8285688 |
Publications ? help Back to Top | |||
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