PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008552
Common NameLOC8285688, RCOM_1438230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 347aa    MW: 37918.2 Da    PI: 5.5942
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008552genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.53.7e-2844138186
       trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rWt+qe+l+Li++++  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl+++ykkike+e+  ++e++s +++ ++l+
  30128.m008552  44 RWTRQEILVLIQGKKVAENRVRRGRtagmafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIKEWENHIREETESFWVMRNDLR 138
                    8**********************97778888888**********************************************9999999*9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.444110IPR017877Myb-like domain
PfamPF138371.1E-1244134No hitNo description
Gene3DG3DSA:1.10.10.606.3E-544109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALQQQFNLT SNTVDGDTTN GVDNTRPASI DGADDGSKTP RLPRWTRQEI LVLIQGKKVA  60
ENRVRRGRTA GMAFGSGQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDYKKIKEWE  120
NHIREETESF WVMRNDLRRE RKLPGFFDRE VFDILDGAGG VSAAPATPGL ALALAPATED  180
SEAVFDSGRT AAAEDGLFSD FEQEDAGGSP EKEAVKEAPP IKAAATGGIA APVPISEKQY  240
QPAVRTDQSQ GATNEKQPPS NPEMGSGLHE SRKRKRFGTT DGDEETTTLQ NQLIGVLERN  300
GEMLTAQLEA QNTNFQLDRE QRKDQANSLV AVLNKLADAL GKIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008552
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512665.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-126ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB9RFZ60.0B9RFZ6_RICCO; Uncharacterized protein
STRINGXP_002512665.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-123Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]