PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30026.m001485
Common NameLOC8275193, RCOM_1252040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BES1
Protein Properties Length: 331aa    MW: 35458.4 Da    PI: 8.281
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30026.m001485genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822217.33.5e-6721471150
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqs 96 
                    ++++r+ptwkErEnnkrRERrRRaiaakiyaGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g sasasp+ss++ 
  30026.m001485   2 TAGTRMPTWKERENNKRRERRRRAIAAKIYAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERMDIMGGSASASPCSSYH- 96 
                    5899*******************************************************************************************. PP

         DUF822  97 slkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsssl 150
                           +sp++sy++sp sssfpsp+s+  + +++     +sl+p+l++ls+ sss+
  30026.m001485  97 -------PSPCASYNPSPGSSSFPSPVSSRYTANTNGnadaNSLIPWLKNLSSGSSSA 147
                    .......*******************998877666556788**********9977664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.2E-684141IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTAGTRMPTW KERENNKRRE RRRRAIAAKI YAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEEDGTTY RKGCKPVERM DIMGGSASAS PCSSYHPSPC ASYNPSPGSS SFPSPVSSRY  120
TANTNGNADA NSLIPWLKNL SSGSSSASSK HPHHLYIHTG SISAPVTPPL SSPTSRTPRT  180
KNDWDDPAAG PSWAGQNYPF LPSSMPSSTP PSPGRQVLPD SGWLAGIQIP QSGPSSPTFS  240
LVSRNPFGFR DEPLSGAGSR MWTPGQSGTC SPAVPAGVDH TADVPMADSM AAEFAFGSNT  300
TGLVKPWEGE RIHEECVSDD LELTLGNSST R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30026.m001485
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522271.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_015576690.10.0BES1/BZR1 homolog protein 4 isoform X2
SwissprotQ9ZV881e-139BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLB9S8F20.0B9S8F2_RICCO; BRASSINAZOLE-RESISTANT 2 protein, putative
STRINGXP_002522271.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-108BES1/BZR1 homolog 4