PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29950.m001171
Common NameLOC8260944, RCOM_1122330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 382aa    MW: 43227.2 Da    PI: 6.3185
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29950.m001171genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM185.51.3e-57161431129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdee++++yL++kv ++ +++  +i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k
  29950.m001171  16 LPPGFRFHPTDEEIITHYLTEKVMNSGFSA-CAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIYKGK 110
                    79*************************999.67***************99999*****************************************99 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                    + lvg+kktLvfykgrapkgekt+Wvmheyrle
  29950.m001171 111 NCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143
                    999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-6512167IPR003441NAC domain
PROSITE profilePS5100560.28716167IPR003441NAC domain
PfamPF023654.1E-3017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEAIVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN SGFSACAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATDSGYWKAT GKDKEIYKGK NCLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEY RLEGKFSYYN LSKAAKDDWV VCRVFHKSIG IKKTSIQDLL  180
RVNSFGDDFL DYSSLPPLMD PPNSSRPSSS FNSGDDDFKA MTSRTMDGNY LSQFSTTMVT  240
NHNQNYFHHQ PSNSSYQQQP SSIFYPQIPS FTFQTTPNMS AAGYFQNSTF GANDQTLLRA  300
LAGNTRIEPS RQEKLCKVEQ FSSNHSMATL SQDTGLSTDV NTAAEISSVV VSEQEIGSNN  360
KVYNDLDQGP SSVADLDSLW DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541416715165NO APICAL MERISTEM PROTEIN
1ut4_B2e-541416715165NO APICAL MERISTEM PROTEIN
1ut7_A2e-541416715165NO APICAL MERISTEM PROTEIN
1ut7_B2e-541416715165NO APICAL MERISTEM PROTEIN
3swm_A2e-541416718168NAC domain-containing protein 19
3swm_B2e-541416718168NAC domain-containing protein 19
3swm_C2e-541416718168NAC domain-containing protein 19
3swm_D2e-541416718168NAC domain-containing protein 19
3swp_A2e-541416718168NAC domain-containing protein 19
3swp_B2e-541416718168NAC domain-containing protein 19
3swp_C2e-541416718168NAC domain-containing protein 19
3swp_D2e-541416718168NAC domain-containing protein 19
4dul_A2e-541416715165NAC domain-containing protein 19
4dul_B2e-541416715165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29950.m001171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051530.0KR605153.1 Manihot esculenta NAC transcription factors 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525465.10.0NAC domain-containing protein 87
SwissprotQ9FK441e-117NAC87_ARATH; NAC domain-containing protein 87
TrEMBLB9SHJ60.0B9SHJ6_RICCO; NAC domain-containing protein 21/22, putative
STRINGXP_002525465.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-118Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]