PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29938.m000611 | ||||||||
Common Name | LOC8264997, RCOM_1102060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 17616.5 Da PI: 7.2519 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.8e-16 | 13 | 62 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++ykGVr++k +g+Wv+eIr+p g + r +lg++ tae Aa a++ a +l+ 29938.m000611 13 KKYKGVRRRK-WGKWVSEIRVP---G-TqERLWLGSYSTAEAAAVAHDVASYCLR 62 59*****998.**********8...3.35*********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.27E-27 | 13 | 71 | No hit | No description |
PROSITE profile | PS51032 | 21.997 | 14 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-9 | 14 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-27 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-19 | 14 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-30 | 14 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-9 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MSGTGPSPST EQKKYKGVRR RKWGKWVSEI RVPGTQERLW LGSYSTAEAA AVAHDVASYC 60 LRAGDGRLNF PLMLPASVKA DMSPKSIQKS ASDAGMAIDA QMILNRSMSS NGGNQCSRNG 120 SYAVNLGQEG ELGWEDGVGS NGSWSGGQGR DYGGDGDLSI SVEDYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 1 | 71 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 21 | KGVRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29938.m000611 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528041.1 | 1e-118 | ethylene-responsive transcription factor ERF020 | ||||
Swissprot | Q9C9I8 | 3e-43 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | B9SPX2 | 1e-117 | B9SPX2_RICCO; Transcriptional factor TINY, putative | ||||
STRING | XP_002528041.1 | 1e-118 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 3e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 29938.m000611 |
Entrez Gene | 8264997 |
Publications ? help Back to Top | |||
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