PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29929.m004634

Common Name

RCOM_1079700

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

CAMTA

Protein Properties

Length: 924aa MW: 102966 Da PI: 5.0463

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29929.m004634	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	57.6	2.5e-18	61	102	75	116
CG-1 75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 vg+ve+l+cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy+e 29929.m004634 61 VGNVEALNCYYAHGEQNPNFQRRSYWMLDPAYEHIVLVHYRE 102 99**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	31.171	8	109	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.6E-26	11	104	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.1E-15	60	102	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.9E-9	353	446	IPR013783	Immunoglobulin-like fold
CDD	cd00102	9.70E-6	362	447	No hit	No description
SuperFamily	SSF81296	5.74E-19	363	446	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.6E-7	365	445	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	3.1E-15	542	651	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.91	559	651	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.2E-15	563	653	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.39E-9	579	651	No hit	No description
Pfam	PF12796	3.0E-7	580	652	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.4E-4	592	621	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.381	592	624	IPR002110	Ankyrin repeat
SMART	SM00248	3700	631	660	IPR002110	Ankyrin repeat
SMART	SM00015	18	709	731	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.62	710	739	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	5.84E-7	757	819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.5	767	789	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.584	768	797	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.019	770	788	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	790	812	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.846	792	815	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.8E-5	793	812	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MSQSGYDINA LFQEAQMRWL KPAEVQFILQ NHEKYQLNQE PPQKPTKLHG IHPKYAMSCM 60 VGNVEALNCY YAHGEQNPNF QRRSYWMLDP AYEHIVLVHY REISEGKSTP GSAAQLSPSS 120 FSPSPSSYTT QNQDSTSIFS DSHDPYHNSS SPGSVEVSSG IVIQDDGLIS IEELTSSREN 180 ENSQFFRRLE EQLSLNEDSI NDVPLDYNQE GAVEDLELLA YEGQFSKKSL SSNLLPGSEY 240 IANNQGYGGH ARMQLQTNSL VHHEDADGSK ESISWNDVLE FQVKHIASCH IYDFLVTIFL 300 ATNTSTLLTQ EVENFDIPAY SSISETYDTN PEYYSVLYDQ GQLEVPIEAD SSLTVAQQQK 360 FRICEISPEW GYNTEVTKVI IIGSFLCDPS ESAWTCMFGN IEVPVEIIQE GVLRCEAPPH 420 LPGKVTFCIT IGNRESCSEI REFEYRSKNG SCAHCNSQME VAKSPEELLL LVRFVQMLLS 480 DSSLLKEDSI ETGIDLLRKL KTDDDSWGSV IEALLVGNGT SSGTVDWLLQ QLLKDKLQQW 540 FSSKSQDIQN RPSCPLSKKE QGIIHMVAGL GFEWALSPIL SHGVSIDFRD INGWTALHWA 600 ARFGREKMVA ALLASGASAG AVTDPTSQDP IGKTPASIAA NNGYKGLAGY LSELALTSHL 660 SSLTLEESEL SKGSAQVEAE RTVDSIAKGS FAANEDQVSL KDTLAAVRNA AQAAARIQSA 720 FRAHSFRKRQ EKEAAVSANC IDEYGVNIGD IQGLSAVSKL AFRNARDYNS AALSIQKKYR 780 GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGVGLRGFRN 840 ETEHVDESED EDILKVFRKQ KVDGAIDEAV SRVLSMVDSP DARQQYHRML ERYRLAKAEL 900 GETSEAVGSG SAANMENDNI YYLE

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MSQSGYDINA LFQEAQMRWL KPAEVQFILQ NHEKYQLNQE PPQKPTKLHG IHPKYAMSCM  60
VGNVEALNCY YAHGEQNPNF QRRSYWMLDP AYEHIVLVHY REISEGKSTP GSAAQLSPSS  120
FSPSPSSYTT QNQDSTSIFS DSHDPYHNSS SPGSVEVSSG IVIQDDGLIS IEELTSSREN  180
ENSQFFRRLE EQLSLNEDSI NDVPLDYNQE GAVEDLELLA YEGQFSKKSL SSNLLPGSEY  240
IANNQGYGGH ARMQLQTNSL VHHEDADGSK ESISWNDVLE FQVKHIASCH IYDFLVTIFL  300
ATNTSTLLTQ EVENFDIPAY SSISETYDTN PEYYSVLYDQ GQLEVPIEAD SSLTVAQQQK  360
FRICEISPEW GYNTEVTKVI IIGSFLCDPS ESAWTCMFGN IEVPVEIIQE GVLRCEAPPH  420
LPGKVTFCIT IGNRESCSEI REFEYRSKNG SCAHCNSQME VAKSPEELLL LVRFVQMLLS  480
DSSLLKEDSI ETGIDLLRKL KTDDDSWGSV IEALLVGNGT SSGTVDWLLQ QLLKDKLQQW  540
FSSKSQDIQN RPSCPLSKKE QGIIHMVAGL GFEWALSPIL SHGVSIDFRD INGWTALHWA  600
ARFGREKMVA ALLASGASAG AVTDPTSQDP IGKTPASIAA NNGYKGLAGY LSELALTSHL  660
SSLTLEESEL SKGSAQVEAE RTVDSIAKGS FAANEDQVSL KDTLAAVRNA AQAAARIQSA  720
FRAHSFRKRQ EKEAAVSANC IDEYGVNIGD IQGLSAVSKL AFRNARDYNS AALSIQKKYR  780
GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGVGLRGFRN  840
ETEHVDESED EDILKVFRKQ KVDGAIDEAV SRVLSMVDSP DARQQYHRML ERYRLAKAEL  900
GETSEAVGSG SAANMENDNI YYLE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29929.m004634

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015572144.1	0.0	calmodulin-binding transcription activator 4, partial
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	B9RMC9	0.0	B9RMC9_RICCO; Calmodulin-binding transcription activator (Camta), plants, putative
STRING	XP_002514898.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	29929.m004634

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]