PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005330
Common NameLOC8272552, RCOM_1046960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 606aa    MW: 67779.5 Da    PI: 6.9356
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005330genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06344367326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                    +  C +f+  G C +G+ C+F H 
  29912.m005330 344 RGVCIDFLVKGKCERGPDCNFKHN 367
                    668********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.21.105.9E-45205IPR029052Metallo-dependent phosphatase-like
CDDcd073809.58E-477233No hitNo description
PROSITE profilePS5010312.605309337IPR000571Zinc finger, CCCH-type
SMARTSM003560.063311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5313338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5313337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-5341367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967341369IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023343368IPR000571Zinc finger, CCCH-type
PfamPF046773.8E-37385500IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.109.5E-5386468IPR011146HIT-like domain
SuperFamilySSF541976.43E-7391464IPR011146HIT-like domain
PfamPF046761.3E-14525601IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRLNQLY KRVQSVNKSA GPFDALFCVG QFFPASSEQL EEFMDYIDGR  60
SHIPLPTYFI GDYGVAAPKV LSAASKNHAK LGFKMDGFEI SDNLFWLKGS GKFILHGLSI  120
AYLSGRQSAD GQQYGTYSQD DADALRAMAE EPGVVDLFLT NEWPSGVTNR ASISDIPTGI  180
SDSVGSDSTV SELVAEIKPR YHIAGTKGVF FAREPYSNSD AVHVTRFLGL ASVGNKDKQK  240
FIHAISPTPG STMTSAEISM KPSNTTLSPY TFIEQAAAPK EGTKRPSDSM SDSQYWRYDV  300
SQKRHRTGAD GDKLCFKFVF SGSCPREEKC HFLHDMDARE QYSRGVCIDF LVKGKCERGP  360
DCNFKHNLLS EGESYSHRRR GFENANTNRS KECWFCLSSP GVESHLIISI GENYYCALAK  420
GPLVQDHILL VPIEHSPNTL SLPQECESEL VRLRKSLKLY YNKQGKETIL FEWASKRGTH  480
ANLQAVPVPS SRAAAVQDIF NMAAEKLGFK FVTMKFNNNS DGRKWLRTQF DRNYSFFYVE  540
LPDGTVLSHS VKENESFPAQ FGREVLAGLL NMPERADWRT CTLSKEEETK MIDELKKQFE  600
ELNPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U4e-11391579673862CWF19-like protein 2
6id1_U4e-11391579673862CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6555993e-78JQ655599.1 Hevea brasiliensis microsatellite HB 41 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514115.10.0zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLB9RK710.0B9RK71_RICCO; Nucleic acid binding protein, putative
STRINGXP_002514115.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923