PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29900.m001628
Common NameLOC8259244, RCOM_1015410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 382aa    MW: 43291.2 Da    PI: 5.6113
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29900.m001628genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.5e-1625116187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    +W+++ + +L+++  ++  +l+rg+l++++W+ev++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++l+a
  29900.m001628  25 CWSEEATATLVDVWGRRYLELNRGNLRQKDWQEVADAVnakhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFESLDA 116
                    7**************************************999999999*************************999888899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2623117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGDLTDSVTP SSAPHSRPLP IREDCWSEEA TATLVDVWGR RYLELNRGNL RQKDWQEVAD  60
AVNAKHGHTK KTHRTDVQCK NRIDTIKKKY KIEKARVTSS NGTLTSSWPF FESLDALIGS  120
NFSAKKQHAS PSLSPSPPVA LPVISSYRRT PTPTAIPFSI PPAAAVSTAA AATLPQKRQL  180
DDGYFRRHYS AMAAAAAAAA ETESEEEEEE EEEEKERESE EDEEGEGIKK LAKAIERFGE  240
VYERVECQKL RQMVDLEKQR MKFAKDLEME RMRIFTETQI QLEKIKKEEH LQEEIGFVEG  300
ERDNKIKLSD SSSISSAEID LSEDVEFQNF FPNLKGTTST QLEDSAEQNS QQQPSGVEER  360
SSRGLKLSGK RSRRRRLRQS WV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29900.m001628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522584.10.0trihelix transcription factor ASIL2
TrEMBLB9S9B50.0B9S9B5_RICCO; Transcription factor, putative
STRINGXP_002522584.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-44sequence-specific DNA binding transcription factors