PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 29889.m003388 | ||||||||
Common Name | LOC8261341, RCOM_1003460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1026aa MW: 114102 Da PI: 7.8137 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.6e-41 | 150 | 227 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ 29889.m003388 150 VCQVEDCSADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 227 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.7E-33 | 145 | 212 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.248 | 148 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-38 | 149 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-29 | 151 | 224 | IPR004333 | Transcription factor, SBP-box |
SMART | SM00248 | 290 | 793 | 822 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF48403 | 4.97E-8 | 796 | 912 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.6E-7 | 797 | 924 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.24E-8 | 798 | 927 | No hit | No description |
SMART | SM00248 | 22 | 850 | 880 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 480 | 890 | 919 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1026 aa Download sequence Send to blast |
MEAKVRGKSH HFYGPVVSDM KAAGKKSLDW DLNDWKWDGD LFTASPLNSV PSDCRNKQLF 60 PVGAEIPQNG GLFNTSASGS DNNNDLDNEK GKRELEKRRR VVVVEDEDLP ADEAGSLILK 120 LGGQAYPIVD EDAKCGKKTK FIGNASNRAV CQVEDCSADL SNAKDYHRRH KVCDMHSKAS 180 KALVGNVMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNR RRRKTHPENV VNGASLNDEK 240 GSSYLLISLL RILSNLHSNS SDQEKNQDLL SHLLRNLASL AGATSEGSIS KVLQESQALE 300 NAGKTAGTLG KGSDKITTGF ESAGPSTMAC KSSEDIVRPL GQGGAVPVSD LAQKSVWDGT 360 PQPMPSSTST KFFPSRCDFP AKIKEPKAAV GRIKFNNIDL NNVYDGSQDS AGNLELSPAP 420 LIPGTGSINC PLWLQSGFHK RSLPQMSGNS DSTSSQSPSS SSGEAQSCTD RIVFKLFGKD 480 PNDFPITLRT QILDWLSHSP TDIESYIRPG CIILTIYLRL GKPEWEEICI DLGARLSKLL 540 DGSTDSFWRT GWVYARVQHC VSFIYNGQVV LDTPLPLKSH KHCRISSIKP IAVTLSERTD 600 FTVKGFNIFR PSTRLLCALE GKYLVQETSR DLMDGADTTN EHNKLQCLTF PCSIPNIIGR 660 GFVEVEDHGL SSSFFPFIVA EKEVCSEICL LEEALEVPET ADGMHKNTER IEAKNQALDF 720 VNEMGWLLHR SRLKFRLGDL YPNLDLFPFR RYKWLIEFSM DHDWCAVVKK LLAILFDGTV 780 DTGEHSSIEL ALLDMGLLHR AVQRNCRSMV ELLLRYVPDK EFGRSGLEQR QEVDGGYKSF 840 IFKPDDVGPG GLTPLHVAAI RDGSENILDA LTDDPGFVGI EAWRRARDST GLTPNDYACL 900 RGHYSYIHLI QRKINTKSEN GHVVLDIPRT LVDCNTKQKD GLKSSKFYGL QIGRMEMNTT 960 KRHCRLCEQK LARGQSRTSL VYRPAMLSMV AIAAVCVCVA LLFKSSPEVL YVFQPFRWEL 1020 VKYGSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 150 | 224 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 96 | 100 | KRRRV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 29889.m003388 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002519316.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9SMX9 | 0.0 | SPL1_ARATH; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | B9RZZ7 | 0.0 | B9RZZ7_RICCO; Squamosa promoter-binding protein, putative | ||||
STRING | XP_002519316.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 29889.m003388 |
Entrez Gene | 8261341 |
Publications ? help Back to Top | |||
---|---|---|---|
|