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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 29889.m003245 | ||||||||
| Common Name | LOC8262611, RCOM_0999330 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 682aa MW: 74828.9 Da PI: 5.9628 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.3 | 8.3e-29 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
29889.m003245 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
79*******************.********************************8 PP
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| 2 | Response_reg | 77.8 | 3.9e-26 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga
29889.m003245 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRENKngYDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADEAKSVVMKGVTHGA 128
89*********************.***************999999**********************6654.8*********************** PP
SEEEESS--HHHHHH CS
Response_reg 95 kdflsKpfdpeelvk 109
d+l Kp+ +e+l +
29889.m003245 129 CDYLIKPVRIEALKN 143
***********9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 4.3E-183 | 10 | 672 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 4.41E-35 | 32 | 157 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 3.8E-42 | 32 | 175 | No hit | No description |
| SMART | SM00448 | 4.6E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.84 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.8E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.78E-27 | 36 | 148 | No hit | No description |
| SuperFamily | SSF46689 | 3.76E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.048 | 210 | 269 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 9.8E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.8E-8 | 215 | 265 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0016310 | Biological Process | phosphorylation | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0016301 | Molecular Function | kinase activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 682 aa Download sequence Send to blast |
MNLSNGKGSM STASSSVAWK AGEVVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCNRAETALS LLRENKNGYD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADEAKSVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKRNEWKDLE QSGSVEEGDR QPKQSEDADY 180 SSSANEGNWR NSKKRKDEEE EGDERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNN LGNAFISPQE ATYGPLSSFN 300 GIDLQTLAAT GQLPAQSLAT LQAAGLGRSA VKSRMPIPIV DQRNLFSFEN PKLRFGEGQQ 360 QQLNNSKQMN LLHGIPTSME PKQLANIHHS AQSIGSMNMQ VNAHGGQGGQ SNSLLMQMSQ 420 SQSRGQMLNE TCVTHVPALP SSIGQPVIST AIAGGVLARN GLAESRGAVY NSVSQSSSII 480 NFPLNNTSEL SGNSFPLASN PGISSLTTKG AFQEEDNSEI KGSVGFMPSY DIFSDLNQHK 540 SHDWELQNVG ITFNASQQNN SLQRNLDVEP SVFSHQRFSS NQRTVPNRNM SVMGKPMFST 600 GDATDHVNVQ SAGQHVNTFF AENSARVKSE PIADANCQTN LFPEQFGQED LMSALLKQQQ 660 GGVGPAENDF DFDGYPLDNI PV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 4e-22 | 212 | 272 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 29889.m003245 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002519174.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | B9RZK5 | 0.0 | B9RZK5_RICCO; Two-component response regulator | ||||
| STRING | XP_002519174.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 0.0 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | 29889.m003245 |
| Entrez Gene | 8262611 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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