PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29883.m002008 | ||||||||
Common Name | LOC8274743, RCOM_0992280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 39745.9 Da PI: 10.1373 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.2e-32 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ 29883.m002008 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 344 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.7E-18 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.4E-34 | 273 | 345 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.641 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-27 | 283 | 345 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-39 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-27 | 287 | 344 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEEVEEANRT AVESCHRVLS LLSKPQDQVQ YRNLMAETGE AVFKFKRVIS LLNSGLGHAR 60 VRKLKKLPTP ISQNILLDNP HHRTDHPSKN YQFLQSSSYL DNQPIQELGS NSKSSLCLGT 120 PSLELSTNGK NPLHVAQQTP SPHYHFLQQQ QQLQLQQRIQ LQQQHQQQMK QQAEIMFRKS 180 NSGINLNFDN SSCTPTMSSN RSFISSLSID GSVTNMEGSA FHLIGGPRAS DQSSQQHKRK 240 CSGRGEDGSV KCGSSGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS WRKYGQKPIK 300 GSPHPRGYYK CSSMRGCPAR KHVERCLEDP SMLIVTYEGE HNHPRIPTQS ANT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 281 | 347 | 10 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29883.m002008 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002520995.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-130 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | B9S4T8 | 0.0 | B9S4T8_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002520995.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-120 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | 29883.m002008 |
Entrez Gene | 8274743 |