PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29883.m001955
Common NameLOC8276683, RCOM_0990350
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 360aa    MW: 41024 Da    PI: 5.916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29883.m001955genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35471382102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++e+++d+ +++++sws+ g sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgFkk++ ++         weF+++ F +g+k++l++i
  29883.m001955  47 FLTKTFEMVDDPITNHVVSWSAGGISFVVWDPHAFSTGLLPRYFKHNNFSSFVRQLNTYGFKKIDPDR---------WEFANEGFLRGQKHQLKNI 133
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+k 
  29883.m001955 134 KRRKA 138
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-5943136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.2E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.2E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MMNPYFTVKE EYAGLSSSQS GDEPPLAQMQ IPPQPMEGLH DTGPPPFLTK TFEMVDDPIT  60
NHVVSWSAGG ISFVVWDPHA FSTGLLPRYF KHNNFSSFVR QLNTYGFKKI DPDRWEFANE  120
GFLRGQKHQL KNIKRRKAPS QPLPHHQQRQ QQQEALGACV EVGRFGLDRE VDRLKRDKQV  180
LMMELVKLRQ QQQNTRAYIQ NMEQRLQGTE LKQQQMMQFL ARAVQNPAFL QQLAQQKDKR  240
KELEEAMTKK RRRPIAQGPS NGGTSHSLNN IKAEPLEIGD YGFGVSELEA LALEMQGYGR  300
ARRGQEEEED DDVEALESGD RELDDGFWEE LLSESTTGGQ NGDVNVLADR LCYLSSSSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-234513618120Heat shock factor protein 1
5d5u_B4e-234513627129Heat shock factor protein 1
5d5v_B4e-234513627129Heat shock factor protein 1
5d5v_D4e-234513627129Heat shock factor protein 1
5hdg_A3e-23451368110Heat shock factor protein 1
5hdn_A3e-23451368110Heat shock factor protein 1
5hdn_B3e-23451368110Heat shock factor protein 1
5hdn_C3e-23451368110Heat shock factor protein 1
5hdn_D3e-23451368110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKNIKRR
2238252KRKELEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap29883.m001955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520943.10.0heat stress transcription factor A-7a
RefseqXP_015575825.10.0heat stress transcription factor A-7a
RefseqXP_015575826.10.0heat stress transcription factor A-7a
RefseqXP_025013446.10.0heat stress transcription factor A-7a
RefseqXP_025013447.10.0heat stress transcription factor A-7a
RefseqXP_025013448.10.0heat stress transcription factor A-7a
RefseqXP_025013449.10.0heat stress transcription factor A-7a
RefseqXP_025013450.10.0heat stress transcription factor A-7a
RefseqXP_025013451.10.0heat stress transcription factor A-7a
RefseqXP_025013452.10.0heat stress transcription factor A-7a
RefseqXP_025013453.10.0heat stress transcription factor A-7a
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9S4N60.0B9S4N6_RICCO; DNA binding protein, putative
STRINGXP_002520943.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-120heat shock transcription factor A6B